These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1154 fasta sequence [GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC-ATACTTGGCTCC-TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK106073 [GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC ATACTTGGCTCC TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCT ] [+] EMBL AU091933 [ TGCAATACTTGG TCCNTTATCTGAG ACCAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCC AAAAAAAAAAAAA ] [+] EMBL CF329044 [ TTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331980 [ TTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAA ] consensusID : consensus_9203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA] [+] EMBL C74298 [NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA] consensusID : consensus_9203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG] [+] EMBL BI808478 [GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9203#0 GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGC 60 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 CGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGG 120 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 AGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCT 180 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 GCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCT 240 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 CCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGA 300 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 CACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTG 360 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 GATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTT 420 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 GGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGC 480 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 TAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGAT-A 539 consensus_9203#2 ------------------------------GCTAGAGGCAAACATCAGTACTGGTGATGA 30 consensus_9203#1 ---------------NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGA 45 * * ** * * * ** ** * consensus_9203#0 TCGAGACCTTCAGGTTT-GTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTG--CTCTGA 596 consensus_9203#2 TCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAG-CTTATGTTCCCTAGTGGCTCTTGA 89 consensus_9203#1 G-GAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCT 104 *** **** * * * * * * * consensus_9203#0 AGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCA-GAATGGGCAGCGGTAACAGG 655 consensus_9203#2 AGGAGGATGTTCAACATAGAA-CAAGGGAAATCAATGCA-GAATGGC--ACGGTAACAGG 145 consensus_9203#1 TGCTGCCT-TACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGG 163 * * * * * ** ** * * * *** *** ** ** consensus_9203#0 AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGA-TATCTTCA-AAA 713 consensus_9203#2 AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAA 205 consensus_9203#1 CGTTATCTGTTC-TACGCCGCTGCATACTTG-GCTCCTTATCTGAGAACAAATTTATCAC 221 * ** * ** * * * *** * ** * *** * ** * * consensus_9203#0 GGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAA 773 consensus_9203#2 GGAGACTTGATGAGCCCTACG--------------------------------------- 226 consensus_9203#1 TGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTC 281 * * ** *** * consensus_9203#0 CAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACT 833 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 AGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTT 341 consensus_9203#0 CCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGT 893 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 GAGGCTANTTTCCCTA-------------------------------------------- 357 consensus_9203#0 TTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAG 953 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 TGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATT 1013 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 CAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTT 1073 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 TATGCCTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1133 consensus_9203#2 ------------------------------------------------------------ consensus_9203#1 ------------------------------------------------------------ consensus_9203#0 AAAAAAAAAAAAAAAAAAAAA 1154 consensus_9203#2 --------------------- consensus_9203#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||