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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1154 fasta sequence
[GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC-ATACTTGGCTCC-TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK106073 [GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGCCGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGGAGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCTGCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCTCCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGC ATACTTGGCTCC TTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCT ]
[+] EMBL AU091933 [ TGCAATACTTGG TCCNTTATCTGAG ACCAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTGCTCTGAAGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCAGAATGGGCAGCGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGATATCTTCAAAAGGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAACAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACTCCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCC AAAAAAAAAAAAA ]
[+] EMBL CF329044 [ TTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGTTTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAGTGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331980 [ TTTGTTTGTTGTGTGTAGCATTCAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTTTATGCCTGGTTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAA ]
consensusID : consensus_9203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA]
[+] EMBL C74298 [NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTTGGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTTGAGGCTANTTTCCCTA]
consensusID : consensus_9203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG]
[+] EMBL BI808478 [GCTAGAGGCAAACATCAGTACTGGTGATGATCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAGCTTATGTTCCCTAGTGGCTCTTGAAGGAGGATGTTCAACATAGAACAAGGGAAATCAATGCAGAATGGCACGGTAACAGGAGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAAGGAGACTTGATGAGCCCTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9203#0 GCCTGGTTTGCTCTGCCCTGCTCTCCCAGCAACGCCAACCCCGATGCTAGCCGCCGCCGC 60
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 CGCCCTCCGCCCGCCCTTCCGCCGCGCCCGCCTGAGCACCTCCCATGGAGGAGGCGGAGG 120
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 AGTGACGCACCCTCTGCGCCCGCGCCTGCAGCGGCGTGCTTTGGCCTGCCGGGCTGACCT 180
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 GCAGCAGGACGCGCCGTTCGCCGCCGCCATCGGCGCCTGCTTGCTAGCCTCCCTCGTGCT 240
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 CCCGACGTCGAGAGGCCGACGAGATGACGACGAGGAGGAAGGGGAGTTTGGCGCGACGGA 300
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 CACGAGGATGGGCGTCATGGGGATCATCTCCTTGCTGCCTTACTTCAACTGGCTGAGCTG 360
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 GATCTTCGCGTGGCTGGACAGCGGGAAGCGGCGTTATCTGTTCTACGCCGCTGCATACTT 420
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 GGCTCCTTATCTGAGAACAAATTTATCACTGTCGCCCGAAGAGAGCTGGTTACCTATAGC 480
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 TAGCATCTTTGCCTGCATTCTCCATGTTCAGCTAGAGGCAAGCATCAGGACTGGTGAT-A 539
consensus_9203#2 ------------------------------GCTAGAGGCAAACATCAGTACTGGTGATGA 30
consensus_9203#1 ---------------NGNGAACGCGTCCNCNNCGGTGACACNGAACCGAGATGACGACGA 45
* * ** * * * ** ** *
consensus_9203#0 TCGAGACCTTCAGGTTT-GTTCAGAGAGCTTGGAGGCTTATTTTCCCTAGTG--CTCTGA 596
consensus_9203#2 TCGAGACCTTCAGGTTTTGCTCAGAGAGCTTTGAG-CTTATGTTCCCTAGTGGCTCTTGA 89
consensus_9203#1 G-GAGGAAGGGGAGTTTGGCGCGACGGACACGAGGATGGGCGTCATGGGGATCATCTCCT 104
*** **** * * * * * * *
consensus_9203#0 AGGAGGATGTTCAACATAGAAACAAGGGAAAATCAATCA-GAATGGGCAGCGGTAACAGG 655
consensus_9203#2 AGGAGGATGTTCAACATAGAA-CAAGGGAAATCAATGCA-GAATGGC--ACGGTAACAGG 145
consensus_9203#1 TGCTGCCT-TACTTCAACTGGCTGAGCTGGATCTTCGCGTGGCTGGACAGCGGGAAGCGG 163
* * * * * ** ** * * * *** *** ** **
consensus_9203#0 AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGA-TATCTTCA-AAA 713
consensus_9203#2 AGAATTCCATCAGCACATGAATCTAGAGAAAAGCTTCGTAATTCAGAGTATCTTCACAAA 205
consensus_9203#1 CGTTATCTGTTC-TACGCCGCTGCATACTTG-GCTCCTTATCTGAGAACAAATTTATCAC 221
* ** * ** * * * *** * ** * *** * ** * *
consensus_9203#0 GGAGACTTGATGAGCCCAACGACGAGAAACAAAACAAATCAGATTGGAACTGAACTCAAA 773
consensus_9203#2 GGAGACTTGATGAGCCCTACG--------------------------------------- 226
consensus_9203#1 TGTCGCCCGAAGAGAGCTGGTTACCTATAGCTAGCATCTTTGCCTGCATTCTCCATGTTC 281
* * ** *** *
consensus_9203#0 CAGTGTCGTCCTTTCTCTTGTCAAGCTGTTTAAGGAAGATCCACATCCTTGTGGAAAACT 833
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 AGCTAGANGCAAGCATCAGGACTGGTGATATCGAGACCTTCAGGTTTGTTCAGANACTTT 341
consensus_9203#0 CCTGTGGCTGCTTGCAAAACCGATGTGCAGTATGTCAAATTAGGCTTAGGTGTAGTTAGT 893
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 GAGGCTANTTTCCCTA-------------------------------------------- 357
consensus_9203#0 TTCCAAGTTAGTCCACGACCACGAGTTGTTGGATCAAGCAGGCAACCAGGCTGATCAGAG 953
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 TGAGGCACCTGCTGTTTTCAGGTTTCTGCAAATTATGTTTTGTTTGTTGTGTGTAGCATT 1013
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 CAGCAAGAATAATTAACGTTGCATGCTTGCTCTATCTGAAATTCTGAATGAAAGTAGCTT 1073
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 TATGCCTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1133
consensus_9203#2 ------------------------------------------------------------
consensus_9203#1 ------------------------------------------------------------
consensus_9203#0 AAAAAAAAAAAAAAAAAAAAA 1154
consensus_9203#2 ---------------------
consensus_9203#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||