These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1303 fasta sequence [GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT-GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG-ATAGTGTTGGTCGATGGC-TGAATGAAC-TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA-GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT-GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT] [+] EMBL CF318133 [GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATC ] [+] EMBL AK102491 [ CGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT] [+] EMBL C73266 [ TCAAATTTNCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTNATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCANAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGAGGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTTGGGCCTCATC AATTTCGNGGAgtt ] [+] EMBL AU085944 [ CAAACTTTTGAANAGTGTTGGGCCAAGGCTTGAATGAACTTGCACACTCATTCCGATATGAATGTCGTCNCAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTAA GGTAAGCACCGCAGAAGNCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTAaaaaaaaa ] consensusID : consensus_9209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 173 fasta sequence [ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF330488 [ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF330489 [ AATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGCGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9209#0 GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTC 60 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTC 120 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 CTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCC 180 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGA 240 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCA 300 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 ATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATT 360 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 CAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGC 420 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 AAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGAGTGGAGTTCCAGACACAAAA 480 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCG 540 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 CTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGA 600 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TATTAGCAGGCGTCAGACTTTTGATAGTGTTGGTCGATGGCTGAATGAACTGCACACTCA 660 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCG 720 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TGAGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGA 780 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GACCTCAGCCTTGGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGAT 840 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 ATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTC 900 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 ATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAG 960 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGA 1020 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGT 1080 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 TCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGT 1140 consensus_9209#1 ------------------------------------------------------------ consensus_9209#0 GTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCT 1200 consensus_9209#1 ----ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTT 56 *** ****** **************************** * consensus_9209#0 GAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGT 1260 consensus_9209#1 GAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGT 116 *********************** ********************************* ** consensus_9209#0 CATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT-------------- 1303 consensus_9209#1 CATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 173 **** * * ********* ******** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||