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Oryza sativa
cluster # 9209 cluster # 9209       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9209#0 length = 1303 sequences # 4  
consensus_9209#1 length = 173 sequences # 2  

consensusID : consensus_9209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1303
fasta sequence
                              [GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT-GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG-ATAGTGTTGGTCGATGGC-TGAATGAAC-TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA-GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT-GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT]

[+] EMBL CF318133             [GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK102491             [            CGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTCGGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTCCTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCCTCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGAGCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCAATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATTCAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGA GGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT]
[+] EMBL C73266               [                                                                                                                                                                                                                                                                                                                                                                                                             TCAAATTTNCTGGCAAGATTTGCAAGGAACGAGTTCTATCCAAACTCTAAATCTACTATT GGAGTGGAGTTCCAGACACAAAAGTTGGTAATTNATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCGCTTCANAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGATATTAGCAGGCGTCAGACTTTTG ATAGTGTTGGTCGATGGC TGAATGAAC TGCACACTCATTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTGAGGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTTGGGCCTCATC AATTTCGNGGAgtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU085944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAAACTTTTGAANAGTGTTGGGCCAAGGCTTGAATGAACTTGCACACTCATTCCGATATGAATGTCGTCNCAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCGTAA GGTAAGCACCGCAGAAGNCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGAGACCTCAGCCTT GGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGATATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTCATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAGGTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGATTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGTTCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGTGTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAGATTAaaaaaaaa   ]


>consensus_9209#0 GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTC GGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTC CTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCC TCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGA GCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCA ATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATT CAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGC AAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGAGTGGAGTTCCAGACACAAAA GTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCG CTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGA TATTAGCAGGCGTCAGACTTTTGATAGTGTTGGTCGATGGCTGAATGAACTGCACACTCA TTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCG TGAGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGA GACCTCAGCCTTGGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGAT ATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTC ATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAG GTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGA TTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGT TCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGT GTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCT GAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGT CATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT



consensusID : consensus_9209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 173
fasta sequence
                              [ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF330488             [ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF330489             [                            AATGTATAGTTCGATTGATCCCCTTTCTGAGGTATTGGGTATACGTGATTGCGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGTCATTCTCTCTACATCATTCTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]


>consensus_9209#1 ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTTGAGG TATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGTCATT TTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9209#0      GTCTAAACCGATCGCACACCCATCCGCCGGCGTCCTCAGCTCGATCTGCTGCCGAAATTC 60
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GGCGCGGCCGCCGCAGCATACACACTCTCCTCCCCTTCTTGACTCCCAACTCGCCGTCTC 120
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      CTCCCTCCTCGCTGCTCTTGCCCCCGCCCCACGCGCGCGGTCCACTCCACCATCCCTTCC 180
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TCGTCTCCTCCGCTCCTCGCGCGTCAAGACGAGCCACCGCTGCCGATCTCCATCTGGCGA 240
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GCAGAGCAGAGGAGGGGATCTTGGTGTAAGTTTGTGAAGCATCAGAGGACAGTTGCATCA 300
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      ATAAAGTTGTCTCACGATGGCCTATGATGGAGATGAGGAACAAAGCCAGGATTATCTATT 360
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      CAAGATTGTTCTACTTGGTGACTCTTCTGTCGGTAAATCAAATTTGCTGGCAAGATTTGC 420
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      AAGGAACGAGTTCTATCCAAACTCTAAATCTACTATTGGAGTGGAGTTCCAGACACAAAA 480
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GTTGGTAATTGATGGCAAGGAAATCAAAGCTCAGATATGGGACACTGCTGGACAAGAGCG 540
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      CTTCAGAGCAGTCACATCTGCCTACTATAGAGGAGCTGTTGGAGCCCTACTTGTTTATGA 600
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TATTAGCAGGCGTCAGACTTTTGATAGTGTTGGTCGATGGCTGAATGAACTGCACACTCA 660
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TTCCGATATGAATGTCGTCACAATTCTTGTTGGCAACAAGACCGATCTCAAGCATGCGCG 720
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TGAGGTGAGCACCGCAGAAGGCAAAGCTCTGGCTGAGTCACAGGGCCTCTTCTTCATGGA 780
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GACCTCAGCCTTGGACTCATCAAATGTCGCGGAAGCTTTCCAAACTGTAGTGAAAGAGAT 840
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      ATACGGCATACTAAGCAGGAAGGTATTTCAATCTCAAGAGCAGAAGAGAAGCGAGCAGTC 900
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      ATTAAGCAACGGGAAACCCGTGATGCTGAGCGACTCCAACGAACCAACCAGTGGTGGGAG 960
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GTGGTGCTGTTCTTCATAGAGCCTGACCTGATGACAGAGCCCTGGTGTAATGCCATGGGA 1020
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TTGGGAGACACATCTGTCCATGTACTGCTTCAGGTTTGGTTTAGTGAAACAAACAGTGGT 1080
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TCCCACCTTCTTCTCTAGAGGTAAGCTGGCTGAGTGAGGTTGGTTGTATGAAAAAGGCGT 1140
consensus_9209#1      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GTGTGCTTGCTTTCCATCAGAGGAAAAATCTCAATGTATAGTTCGATTGATCCCCTTTCT 1200
consensus_9209#1      ----ATGGGCTGAAGGAGTAGAAAAAAATTTCAATGTATAGTTCGATTGATCCCCTTTTT 56
                              ***            ****** **************************** *

consensus_9209#0      GAGGTATTGGGTATACGTGATTGTGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGTGT 1260
consensus_9209#1      GAGGTATTGGGTATACGTGATTGGGTAAAGGAAAAAGTGTGACCAACTGGGCTGTTGGGT 116
                      *********************** ********************************* **

consensus_9209#0      CATTCTCTCTACATCATTCTAGCCTTAGATTACTTGCTTTTTT-------------- 1303
consensus_9209#1      CATTTTTTTTACATCATTTTAGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 173
                      **** * * ********* ******** *  *                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)