These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1568 fasta sequence [TGGAGTCTGTCTGCCGCCACCTCCTCCCAGCATCACCGCCTATCCTTTACCAGAATCCGTTAGGTGCCATCAGGCTGGAGTCATCTCCAGTGATTATTGGGGGGATGGTGCTGGACATCCATGCCAAGCCATCCATGCAGCCGCATCCTGGAACGACTGTGCCTGGGATGGTTAAGTACGTCAGTGGGGGAGTAGCAAGAAATATTGCCGAGTGCATTTGTAAGCTTGAGACTCGACCATTCATGATTAGTGTTGTTGGAAATGATATGGCAGGGGATTTCCTTTTGAAATACTGGAGGTCGGCTGGACTATGTACAGATGGAATACTGCAGATTGATGACGTAACAACCCCAATAGTATCAAATGTGTTTGATGGGAGCGGTGAATTAATTGCTGGCGTTGCAAGTGTTGGGGCAGTTGAAAAATTTCTCTCTCCTAGCTGGATATGTCAGTTCCGTCTTCATATCTCCACTGCACCTCTACTAATGCTTGATGCAAATTTATCTCCTGATTCACTTGAAGCCGCCTGCAAAATAGCACATGAATCAGGAGTGCCTGTGTTTTTTGAGCCTGTCTCACTTGCGAAGGGTTCAAGGATTGCACCAATTGCAAAATATATTACTTACACTTCCCCAAATGAGATTGAGCTTGTGGCAATGGCAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACAAAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCGAAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAG-CTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGC--TATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATACTTCGTCAGTTTCTGTAGGCTAGTGATGATGCCACGTTTGCATCTGTATGATAATGTCACATCAGCGTCACGTAGGATCTCGAAAATGGTCGTGGCAATCTTGAACCAGAATGATATATTTTGTGGTACTAGGAGTTCTGGTGGAT] [+] EMBL AK064157 [TGGAGTCTGTCTGCCGCCACCTCCTCCCAGCATCACCGCCTATCCTTTACCAGAATCCGTTAGGTGCCATCAGGCTGGAGTCATCTCCAGTGATTATTGGGGGGATGGTGCTGGACATCCATGCCAAGCCATCCATGCAGCCGCATCCTGGAACGACTGTGCCTGGGATGGTTAAGTACGTCAGTGGGGGAGTAGCAAGAAATATTGCCGAGTGCATTTGTAAGCTTGAGACTCGACCATTCATGATTAGTGTTGTTGGAAATGATATGGCAGGGGATTTCCTTTTGAAATACTGGAGGTCGGCTGGACTATGTACAGATGGAATACTGCAGATTGATGACGTAACAACCCCAATAGTATCAAATGTGTTTGATGGGAGCGGTGAATTAATTGCTGGCGTTGCAAGTGTTGGGGCAGTTGAAAAATTTCTCTCTCCTAGCTGGATATGTCAGTTCCGTCTTCATATCTCCACTGCACCTCTACTAATGCTTGATGCAAATTTATCTCCTGATTCACTTGAAGCCGCCTGCAAAATAGCACATGAATCAGGAGTGCCTGTGTTTTTTGAGCCTGTCTCACTTGCGAAGGGTTCAAGGATTGCACCAATTGCAAAATATATTACTTACACTTCCCCAAATGAGATTGAGCTTGTGGCAATGGCAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACAAAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCGAAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAG CTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGC TATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATACTTCGTCAGTTTCTGTAGGCTAGTGATGATGCCACGTTTGCATCTGTATGATAATGTCACATCAGCGTCACGTAGGATCTCGAAAATGGTCGTGGCAATCTTGAACCAGAATGATATATTTTGTGGTACTAGGAGTTCTGGTGGAT] [+] EMBL CA764870 [ AGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTACTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAGCCTAAAATGATGTGGTGCAAATAACCATTGGTGNTATCTCCTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAATTTGGTTGCATGTACCTATGCCTTTATACTTTATCAGTTTCTGTAGGCTAGNGATGATGCCACGGTTGCATCTGTATGATAATGNCACATCAGCG ] [+] EMBL AU078270 [ AATTTCCTAATACCGTTTGTTGATTAGGC TATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATA TTCGTCAGTTTCTGTAGGCTAGTGATGATGCCACGTTTGCATCTGTATGATAATGTCACATCAGCGTCACGTAGGATCTCGAAAAaaaaa ] consensusID : consensus_9218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 759 fasta sequence [CTTGTGGCAATGGCAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACAAAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCGAAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAGCTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAAAAAAAAAAAGGA] [-] EMBL CB653665 [CTTGTGGCAATGGCAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACAAAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCGAAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTATCAGCTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGCATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATAAGGCTGAGTGTGGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCACGGCAGGTTTCTAAAAAAAAAAAAGGA] [+] EMBL CF195953 [ TGGCAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACAAAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCGAAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCAAAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCACTACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAGGCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCACAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGNNNTTTGGGTATGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTAATATACCTGANNNNNNNNCTGCNNNNNCTATCGCNNNTGATGNANNNNNNNNATTGCTATCng ] consensusID : consensus_9218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence [AGGAGTAGATTAAGGTGCACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331340 [AGGAGTAGATTAAGGTGCACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9218#0 TGGAGTCTGTCTGCCGCCACCTCCTCCCAGCATCACCGCCTATCCTTTACCAGAATCCGT 60 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TAGGTGCCATCAGGCTGGAGTCATCTCCAGTGATTATTGGGGGGATGGTGCTGGACATCC 120 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 ATGCCAAGCCATCCATGCAGCCGCATCCTGGAACGACTGTGCCTGGGATGGTTAAGTACG 180 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TCAGTGGGGGAGTAGCAAGAAATATTGCCGAGTGCATTTGTAAGCTTGAGACTCGACCAT 240 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TCATGATTAGTGTTGTTGGAAATGATATGGCAGGGGATTTCCTTTTGAAATACTGGAGGT 300 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CGGCTGGACTATGTACAGATGGAATACTGCAGATTGATGACGTAACAACCCCAATAGTAT 360 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CAAATGTGTTTGATGGGAGCGGTGAATTAATTGCTGGCGTTGCAAGTGTTGGGGCAGTTG 420 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 AAAAATTTCTCTCTCCTAGCTGGATATGTCAGTTCCGTCTTCATATCTCCACTGCACCTC 480 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TACTAATGCTTGATGCAAATTTATCTCCTGATTCACTTGAAGCCGCCTGCAAAATAGCAC 540 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 ATGAATCAGGAGTGCCTGTGTTTTTTGAGCCTGTCTCACTTGCGAAGGGTTCAAGGATTG 600 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CACCAATTGCAAAATATATTACTTACACTTCCCCAAATGAGATTGAGCTTGTGGCAATGG 660 consensus_9218#1 -----------------------------------------------CTTGTGGCAATGG 13 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACA 720 consensus_9218#1 CAAATTCATTATCTCCTCCTGAGAAATATACTTTTGTCAAAATGGAGCAGTCCAAGAACA 73 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 AAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCG 780 consensus_9218#1 AAGCCAAAGCTGTAGAGTATTTGTTTGAAATGCTCAGCCCAGCAATGTTTTTCCTCCTCG 133 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 AAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCA 840 consensus_9218#1 AAAAGGGCATAAAGTTTCTTCTGGTGACGCTTGGCTCAAATGGTGTTTTTGTTTGTTGCA 193 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 AAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCAC 900 consensus_9218#1 AAGAGAGCACAAGTTTGATGGACCAGCGAAAGTCTGAAATGATGTCTTTCTCAACTCCAC 253 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAG 960 consensus_9218#1 TACTTCAAAAATTGGAGCGATGTTTTCCATCTAACATGCTTGTAGATTTGCCTAGAGAAG 313 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 GCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCA 1020 consensus_9218#1 GCTCTTCCAGAACATGTGTTTTTCATTTTCCTGCAGTATCTGCCTCAGTGGTTAGCCTCA 373 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTA 1080 consensus_9218#1 CAGGTGCTGGTGATTGTTTTGTTGGTGGAGTCATTTCAGCTCTATGTGGAGGTTTGGGTA 433 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTA 1140 consensus_9218#1 TGATGCAATCTGTTGCGGTTGGGATTGCTATAGCAAAATCATCAGTGGAATCTGAAGCTA 493 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 ATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTAT 1200 consensus_9218#1 ATATACCTGATAAGTTTTCTGCTGCAACTATCGCAGATGATGCAAGAAGAACATTGCTAT 553 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CAGCTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGC 1260 consensus_9218#1 CAGCTAAAATGATGTGGTGCAAATAACCATTGGTGTTATCTCGTGAAAGTCTTGGTGGGC 613 consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 ATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATAAGGCTGAGTGT 1320 consensus_9218#1 ATGTAATTTCCTAATACCGTTTGTTGATTAGGCTATATATATATATATAAGGCTGAGTGT 673 consensus_9218#2 ------------------------------------------AGGAGTAGATTAAGGTGC 18 * ** *** consensus_9218#0 GGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCAC 1380 consensus_9218#1 GGATTCAGGTCGTGGGCTGGTGACAACTTAGCAAGTTTAATGTAGTAGATTAAGGAGCAC 733 consensus_9218#2 ACGGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATATTTAAAAAAAAAAAAA 78 * * * * ** * ** * * * ** * * ** * * consensus_9218#0 GGCAGGTTTCTAAATTTGTTTGCATGTACCTATGCCTTTATACTTCGTCAGTTTCTGTAG 1440 consensus_9218#1 GGCAGGTTTCTAAAAAAAAAAAAGGA---------------------------------- 759 consensus_9218#2 AAAAA------AAAAAAAAAAAAAAA---------------------------------- 98 * *** consensus_9218#0 GCTAGTGATGATGCCACGTTTGCATCTGTATGATAATGTCACATCAGCGTCACGTAGGAT 1500 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 CTCGAAAATGGTCGTGGCAATCTTGAACCAGAATGATATATTTTGTGGTACTAGGAGTTC 1560 consensus_9218#1 ------------------------------------------------------------ consensus_9218#2 ------------------------------------------------------------ consensus_9218#0 TGGTGGAT 1568 consensus_9218#1 -------- consensus_9218#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||