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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1059 fasta sequence
[GCTCGATTATATTACAATTACAGATGCTCGTCCATTGTTCCACCACCCAAATAAAACGACATTCAGAGATAGATAATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATCGAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGGGAATACTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCAGAGATGCAGATCGTCGGGTGGTTCTGTAGCGAGGGAAGCACCGGAGAAGGCTCTGTTGATGATGATGATTATGATGCTGGTGATGGTGATGGTGCAGCGGATGCGGAGGCGGTATATATGACTGCAAGAAGGATGGATCCTCTTCAAGAGCTTCTATGTAGCTCTCAAGTATGGCGACGATGTCGTCGAACTGAGGCCTTCTGTCTGGGTTGGTCGCCCAGCACTGAGTTATCAGATGGCTTATTGCCACAGGGCATGAAGGAGGCAGTGGTGGCCTAGCATTCTTCAAGGCAACAGCAACAGCAGCTTGCTCGGGTGTCATCTCACTGAATGGTACCAAAGCAGTCAAAATCTCCCACAAGACAATTCCAAAGCTGTATACATCAACCTTCCTCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATCTCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCGAGTGTAAGTAGCTCATTCCACGAGCAATCTCTAAGGATAACTTCAACACTAATTCAATTGGAACAGAATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACTCAGTAATGATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGA]
[+] EMBL CB627999 [GCTCGATTATATTACAATTACAGATGCTCGTCCATTGTTCCACCACCCAAATAAAACGACATTCAGAGATAGATAATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATCGAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGGGAATACTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCAGAGATGCAGATCGTCGGGTGGTTCTGTAGCGAGGGAAGCACCGGAGAAGGCTCTGTTGATGATGATGATTATGATGCTGGTGATGGTGATGGTGCAGCGGATGCGGAGGCGGTATATATGACTGCAAGAAGGATGGATCCTCTTCAAGAGCTTCTATGTAGCTCTCAAGTATGGCGACGATGTCGTCGAACTGAGGCCTTCTGTCTGGGTTGGTCGCCCAGCACTGAGTTATCAGATGGCTTATTGCCACAGGGCATGAAGGAGGCAGTGGTGGCCTAGCATTCTTCAAGGCAACAGCAACAGCAGCTTGCTCGGGTGTCATCTCACTGAATGGTACCAAAGCAGTCAAAATCTCCCACAAGACAATTCCAAAGCTGTATACATCAACCTTCCTCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATCTCCATCGAGAAGTATATTCTCTGACT ]
[-] EMBL AK059460 [ CTCGATTATATTACAATTACAGATGCTCGTCCATTGTTCCACCACCCAAATAAAACGACATTCAGAGATAGATAATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATCGAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGGGAATACTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCAGAGATGCAGATCGTCGGGTGGTTCTGTAGCGAGGGAAGCACCGGAGAAGGCCCTGTTGATGATGATGATTATGATGCTGGTGATGGTGATGGTGCAGCGGATGCGGAGGCGGTATATATGACTGCAAGAAGGATGGATCCTCTTCAAGAGCTTCTATGTAG ]
[-] EMBL CB000668 [ AGGAGGCAGTGGTGGCCTAGCATTCTTCAAGGCAACAGCAACAGCAGCTTGCTCGGGTGTCATCTCACTGAATGGTACCAAAGCAGTCAAAATCTCCCACAAGACAATTCCAAAGCTGTATACATCAACCTTCCTCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATCTCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCGAGTGTAAGTAGCTCATTCCACGAGCAATCTCTAAGGATAACTTCAACACTAATTCAATTGGAACAGAATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACTCAGTAATGATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGA]
consensusID : consensus_9239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[TGCGGGGCGGGAGATATTACGCAAAAGAATGGTTCCTCGTCAAAGGTTCTATGAACTGTCAATATGGCAGCGAAGTGGTAGAGGGGAGGCTTCTGGTCTGGGTGTATCGGCCAGCGCTGAGGTATCGGAGGGCTTATTTTCCCAGTGCATGAAGGAGGCAGTGGTGGCTTAGCTTTTTCAGAGGCACCAGCAACACCAGCTTGCTCGGGTGTCATCTCAATGAATGGTGCCAAAGCAGTCAAAATCTCCCACAAGCCAATTCCAAAGCCTGTATACATCAACCTTCCTCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATCTCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCGAGTGTAAGTAGCTCATTCCACGAGCAATCTTTAAGGATAACTTCAACACTAATTCAATTGGAACAGAATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACTCAGTAATGATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGAGGTGATGTTGGGGTGGCGGAGGCGGAGGATACCAAAAAAAAAAAAAAA]
[-] EMBL CA763065 [TGCGGGGCGGGAGATATTACGCAAAAGAATGGTTCCTCGTCAAAGGTTCTATGAACTGTCAATATGGCAGCGAAGTGGTAGAGGGGAGGCTTCTGGTCTGGGTGTATCGGCCAGCGCTGAGGTATCGGAGGGCTTATTTTCCCAGTGCATGAAGGAGGCAGTGGTGGCTTAGCTTTTTCAGAGGCACCAGCAACACCAGCTTGCTCGGGTGTCATCTCAATGAATGGTGCCAAAGCAGTCAAAATCTCCCACAAGCCAATTCCAAAGCCTGTATACATCAACCTTCCTCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATCTCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCGAGTGTAAGTAGCTCATTCCACGAGCAATCTTTAAGGATAACTTCAACACTAATTCAATTGGAACAGAATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACTCAGTAATGATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGAGGTGATGTTGGGGTGGCGGAGGCGGAGGATACCAAAAAAAAAAAAAAA]
consensusID : consensus_9239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[TTTTTTTTTTATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATCGAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGGGAATACTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCAGAGATGCAGATCGTCCGGGTGGGTTCTGTAGCGAGGGAAGCACCGGAGAAGGCTCTGTTGATGATGATGATTATGAT]
[+] EMBL CF336932 [TTTTTTTTTTATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATCGAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGGGAATACTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCAGAGATGCAGATCGTCCGGGTGGGTTCTGTAGCGAGGGAAGCACCGGAGAAGGCTCTGTTGATGATGATGATTATGAT]
consensusID : consensus_9239#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence
[TTTTTTTTTTCCTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCA]
[-] EMBL CA757457 [TTTTTTTTTTCCTAAATCATAGCAAGCCTTACTGCCGCATAATAGGGGGCCGGCGCATTGAAAAAGGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTCATCCAGATTATACTCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 GCTCGATTATATTACAATTACAGATGCTCGTCCATTGTTCCACCACCCAAATAAAACGAC 60
consensus_9239#1 -------------TGCGGGGCGGGAGATATTACGCAAAAGAATGGTTCCTCGTCAAAGGT 47
consensus_9239#2 -----TTTTTTTTTTATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATC 55
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 ATTCAGAGATAGATAATCACCAGAAAAACTGCTGCTTGTCGTCTCTCAAGTAAGTCGATC 120
consensus_9239#1 TCTATGAACTGTCAATATGGCAGCGAAGTGGTAGAGGGGAGGCTTCTGGTCTGGGTGTAT 107
consensus_9239#2 GAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGG 115
consensus_9239#3 ------------------------------------------------------TTTTTT 6
consensus_9239#0 GAGGCAGGCATTAATGATGGAAAATCGTCAATAATAAACAGAAAAAAAATGAAAGAAGGG 180
consensus_9239#1 CGGCCAGCGCTGAGGTATCGGAGGGCTTATTTTCCCAGTGCATGAAGGAGGCAGTGGTGG 167
consensus_9239#2 GAATACTAAATCATAGCAAGCCTTACTGCC-GCATAATAGGGGGCCGGCGCATTGAAAAA 174
consensus_9239#3 TTTTCCTAAATCATAGCAAGCCTTACTGCC-GCATAATAGGGGGCCGGCGCATTGAAAAA 65
consensus_9239#0 GAATACTAAATCATAGCAAGCCTTACTGCC-GCATAATAGGGGGCCGGCGCATTGAAAAA 239
consensus_9239#1 CTTAGCTTTTTCAGAGGCACCAGCAACACCAGCTTGCTCGGGTGTCATCTCAATGAATGG 227
** *** ** * * * ** ** * * *** * * * ** ****
consensus_9239#2 GGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTC 234
consensus_9239#3 GGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTC 125
consensus_9239#0 GGAAAAAAGAAACTGAAAAAACAAAGTGCATACATCATACACGGCGAAGACGAAGCCGTC 299
consensus_9239#1 TGCCAAAGCAGTCAAAATCTCCCACAAGCCAATTCCAAAGCCTGTATACATCAACCTTCC 287
* *** * * ** * * ** * ** * * * * * ** * *
consensus_9239#2 ATCCAGATTATACTCTCAGAGATGCAGATCGTCCGGGTGGGTTCTGTAGCGAGGGAAGCA 294
consensus_9239#3 ATCCAGATTATACTCTCA------------------------------------------ 143
consensus_9239#0 ATCCAGATTATACTCTCAGAGATGCAGATCGTCGGGT--GGTTCTGTAGCGAGGGAAGCA 357
consensus_9239#1 TCGTATGGTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAAC 347
* * *
consensus_9239#2 CCGGAGAAGGCTCTGTTGATGATGATGATTATGAT------------------------- 329
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 CCGGAGAAGGCTCTGTTGATGATGATGATTATGATGCTGGTGATGGTGATGGTGCAGCGG 417
consensus_9239#1 CCTTACCACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTG 407
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 ATGCGGAGGCGGTATATATGACTGCAAGAAGGATGGATCCTCTTCAAGAGCTTCTATGTA 477
consensus_9239#1 ACATATCTCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCG 467
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 GCTCTCAAGTATGGCGACGATGTCGTCGAACTGAGGCCTTCTGTCTGGGTTGGTCGCCCA 537
consensus_9239#1 AGTGTAAGTAGCTCATTCCACGAGCAATCTTTAAGGATAACTTCAACACTAATTCAATTG 527
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 GCACTGAGTTATCAGATGGCTTATTGCCACAGGGCATGAAGGAGGCAGTGGTGGCCTAGC 597
consensus_9239#1 GAACAGAATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACT 587
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 ATTCTTCAAGGCAACAGCAACAGCAGCTTGCTCGGGTGTCATCTCACTGAATGGTACCAA 657
consensus_9239#1 CAGTAATGATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGAGGTGATGTTGG 647
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 AGCAGTCAAAATCTCCCACAAGACAATTCCAAAGCTGTATACATCAACCTTCCTCGTATG 717
consensus_9239#1 GGTGGCGGAGGCGGAGGATACCAAAAAAAAAAAAAAA----------------------- 684
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 GTGTTTCTCTTTGATCATTTCTGGAGCCATCCACCTATACGTTCCAGTAAAACCCTTACC 777
consensus_9239#1 ------------------------------------------------------------
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 ACTTCCGCACTGCGATTCTAAGCACGAAATTCCAAAATCTGCCACCTTTACTGACATATC 837
consensus_9239#1 ------------------------------------------------------------
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 TCCATCGAGAAGTATATTCTCTGACTTCAAGTCTCTGTGAAGTATGCCTTGCGAGTGTAA 897
consensus_9239#1 ------------------------------------------------------------
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 GTAGCTCATTCCACGAGCAATCTCTAAGGATAACTTCAACACTAATTCAATTGGAACAGA 957
consensus_9239#1 ------------------------------------------------------------
consensus_9239#2 ------------------------------------------------------------
consensus_9239#3 ------------------------------------------------------------
consensus_9239#0 ATGAGGTTCTTGCTGATGTAGATATTTCCTAAGGGAGCCACCTGCCATGTACTCAGTAAT 1017
consensus_9239#1 ------------------------------------------------------------
consensus_9239#2 ------------------------------------------
consensus_9239#3 ------------------------------------------
consensus_9239#0 GATACAGAAGACTGGTGGTTTCTTGCATGCTGCAACAAACGA 1059
consensus_9239#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||