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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1881 fasta sequence
[TTAATAAAAAATAAAGCTCGTCGTCGTCGCCG-TCTCCCTCGCCGCCGACGAGTCAAAGAGGCGGCGGCGGTGCCGGTACCGGCCGGGCGCGCCCCGGCCGTGTCCCCGCCATGCCCGACCTCACCAAACCCCCTTCCCCTCGCCCCCGCCGCCGCCGCTGCCGCCTCTGCGGCATCTGCCTCGGCACCGCGCTCCTCGCCCTCCTCGTCTCCTCCCTCGCCCACCTCTTCTCCCCGCCGCAGCCACAGCCGCAGCTGCAGCCGCCGCGGCCCTCCCCCTCCTCCTCGCCACCGCGCTTCGCGGTCATCATCGACGGGGGGAGCACCGGCAGCCGGGCGCACGTCTTCGCCACGGGGCCCGGCGGGCGGCCGGATCTGGCGCGGTCGGCCGTGATGCGCGTCACCCCGGGGCTCTCCTCGTTCGCCGACGAGCCCGCGCGGGCCGGGGATTCGCTGCGGCCGCTGATTGATTTCGCCAGGGAGAAGGTCGGGGGCGCCGCGGCGGAAGTGCGGCTCATGGCCACCGCCGGGCTGCGGCTGCAGGAGGGGCGCCTCCAGGAGGCCATCCTGTCGTCCTGCAGGGACGTGCTCAGGGCTTCCGGATTCCGGTTCGAGGACTCTTGGGCCGAGGTGATCCCAGGCTCTGATGAGGGTATCTATGCTTGGGTTGCGGCAAACTATGCTCTTGGCACACTTGGAGGGGATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAGCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACTTTGGACAAAATGCTGCACAAGAATCCTTCCGTGAAATACTGCGGTCAAAAGACTCCAAAAATGGTACACTTGTTGATCCATGTGCTCCTAAAGGATATTCTCGCATCAAAGAAGTAATATCAAGACCAAGCAGTGCTTCAAAATCAAAATTAGAGAATCAATTTGCTGATAGTGGGGATGGAGACTTTACAGTGTGCAGATCTTCTTCTTTGGCACTGCTGAAAAAAGGCAACGAAGAGTGCCGATATCAACAATGCCAACTTGGACCAACTTTTGTACCTGAGCTTCGTGGACATTTCTTAGCAACTGAAAATTTCTATTTTACATCAAAGTTCTTTGGACTGAAGCAATCTTCATCACTGTCTGATTTTGTGCTTGCTGGAGAACAATTTTGCAACAAGGACTTGTCTACTCTTAGGAAAATGTATCCTAATCGGTCAGATGATGATTTTTCACGTTATTGCTTCTCATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACTGGTAGATCAGCCCATAGAAGTAGACCATTGCTTGCTGTGCTGCTGGGGGTGTTTCTTCTAGGTGGAGCACTTTGCTTGGCAAGATGGAGGAAGCCCAAGACGAAGATCATATACGACTTGGAGAAAGGCCGGTACATAATCACACGCATCAGCTGACGCTGACCTTTGTGCAGAGGAATCACATATATATACGACAGGAATAGATGTTTGTTATGTGTACCATAGTGTACGAGTTCAATTCTTTGTATTCTTTCTCCTTTTTAAGAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAGCTTTGCTCATGTACGTGATATG]
[+] EMBL AK099806 [TTAATAAAAAATAAAGCTCGTCGTCGTCGCCG TCTCCCTCGCCGCCGACGAGTCAAAGAGGCGGCGGCGGTGCCGGTACCGGCCGGGCGCGCCCCGGCCGTGTCCCCGCCATGCCCGACCTCACCAAACCCCCTTCCCCTCGCCCCCGCCGCCGCCGCTGCCGCCTCTGCGGCATCTGCCTCGGCACCGCGCTCCTCGCCCTCCTCGTCTCCTCCCTCGCCCACCTCTTCTCCCCGCCGCAGCCACAGCCGCAGCTGCAGCCGCCGCGGCCCTCCCCCTCCTCCTCGCCACCGCGCTTCGCGGTCATCATCGACGGGGGGAGCACCGGCAGCCGGGCGCACGTCTTCGCCACGGGGCCCGGCGGGCGGCCGGATCTGGCGCGGTCGGCCGTGATGCGCGTCACCCCGGGGCTCTCCTCGTTCGCCGACGAGCCCGCGCGGGCCGGGGATTCGCTGCGGCCGCTGATTGATTTCGCCAGGGAGAAGGTCGGGGGCGCCGCGGCGGAAGTGCGGCTCATGGCCACCGCCGGGCTGCGGCTGCAGGAGGGGCGCCTCCAGGAGGCCATCCTGTCGTCCTGCAGGGACGTGCTCAGGGCTTCCGGATTCCGGTTCGAGGACTCTTGGGCCGAGGTGATCCCAGGCTCTGATGAGGGTATCTATGCTTGGGTTGCGGCAAACTATGCTCTTGGCACACTTGGAGGGGATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAGCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACTTTGGACAAAATGCTGCACAAGAATCCTTCCGTGAAATACTGCGGTCAAAAGACTCCAAAAATGGTACACTTGTTGATCCATGTGCTCCTAAAGGATATTCTCGCATCAAAGAAGTAATATCAAGACCAAGCAGTGCTTCAAAATCAAAATTAGAGAATCAATTTGCTGATAGTGGGGATGGAGACTTTACAGTGTGCAGATCTTCTTCTTTGGCACTGCTGAAAAAAGGCAACGAAGAGTGCCGATATCAACAATGCCAACTTGGACCAACTTTTGTACCTGAGCTTCGTGGACATTTCTTAGCAACTGAAAATTTCTATTTTACATCAAAGTTCTTTGGACTGAAGCAATCTTCATCACTGTCTGATTTTGTGCTTGCTGGAGAACAATTTTGCAACAAGGACTTGTCTACTCTTAGGAAAATGTATCCTAATCGGTCAGATGATGATTTTTCACGTTATTGCTTCTCATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACTGGTAGATCAGCCCATAGAAGTAGACCATTGCTTGCTGTGCTGCTGGGGGTGTTTCTTCTAGGTGGAGCACTTTGCTTGGCAAGATGGAGGAAGCCCAAGACGAAGATCATATACGACTTGGAGAAAGGCCGGTACATAATCACACGCATCAGCTGACGCTGACCTTTGTGCAGAGGAATCACATATATATACGACAGGAATAGATGTTTGTTATGTGTACCATAGTGTACGAGTTCAATTCTTTGTATTCTTTCTCCTTTTTAAGAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAGCTTTGCTCATGTACGTGATATG]
[+] EMBL CB682186 [ GCCGCTCT CCTCGCCGCCGACGAGTCAAAGAGGCGGCGGCGGTGCCGGTACCGGCCGGGCGCGCCCCGGCCGTGTCCCCGCCATGCCCGACCTCACCAAACCCCCTTCCCCTCGCCCCCGCCGCCGCCGCTGCCGCCTCTGCGGCATCTGCCTCGGCACCGCGCTCCTCGCCCTCCTCGTCTCCTCCCTCGCCCACCTCTTCTCCCCGCCGCAGCCGCAGCCGCAGCTGCAGCCGCCGCGGCCCTCCCCCTCCTCCTCGCCACCGCGCTTCGCGGTCATCATCGACGGGGGGAGCACCGGCAGCCGGGCGCACGTCTTCGCCACGGGGCCCGGCGGGCGGCCGGATCTGGCGCGGTCGGCCGTGATGCGCGTCACCCCGGGGCTCTCCTCGTTCGCCGACGAGCCCGCGCGGGCCGGGGATTCGCTGCGGCCGCTGATTGATTTCGCCAGGGAGAAGGTCGGGGGCGCCGCGGCGGAAGTGCGGCTCATGGCCACCGCCGGGCTGCGGCTGCAGGAGGGGCGCCTCCAGGAGGCCATCCTGTCGTCCTGCAGGGACGTGCTCAGGGCTTCCGGATTCCGGTTCGAGGACTCTTGGGCCGAGGTGATCCCAGGCTCTGATGAGGGTATCTATGCTTGGGTTGCGGCAAACTATGCTCTTGGCACACTTGGAGGGGATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAGCTGACATTTGTTTCTGAT ]
[+] EMBL AU065811 [ TTGATTTCGCCAGGGAGAAGGTCGGGGGCGCCGCGGCGGAAGTGCGGCTCATGGCCACCGCCGGGCTGCGGCTGCAGGAGGGGCGCCTCCAGGAGGCCATCCTGTCGTCCTGCAGGGACGTGCTCAGGGCTTCCGGATTCCGGTTCGAGGACTCTTGGGCCGAGGTGATCCCAGGCTCTGATGAGGGTATCTATGCTTGGGTTGCGGCAAACTATGCTCTTGGCACACTTGGAGGGGATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAGCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAANTTTGGACAAAATGCTGCACAAGAATCCTTCCGTGAAATACTGCGGTCAAAAGACTCCAAAAATGGTACACTTGTTGATCCATGTGCTCCTAAAG ]
[+] EMBL AW070168 [ TGATCCATGTGCTCCTAAAGGATATCCTCGCATCAAAGAAGTAATATCAAGACCAAGCAGTGCTTCAAAATCAAAATTAGAGAATCAATTTGCTGATAGTGGGGATGGAGACTTTACAGTGTGCAGATCTTCTTCTTTGGCACTGCTGAAAAAAGGCAACGAAGAGTGCCGATATCAACAATGCCAACTTGGACCAACTTTTGTACCTcggc ]
[-] EMBL CB682187 [ GACATTTCTTAGCAACTGAAAATTTCTATTTTACATCAAAGTTCTTTGGACTGAAGCAATCTTCATCACTGTCTGATTTTGTGCTTGCTGGAGAACAATTTTGCAACAAGGACTTGTCTACTCTTAGGAAAATGTATCCTAATCGGTCAGATGATGATTTTTCACGTTATTGCTTCTCATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGAGGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCATCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACTGGTAGATCAGCCCATAGAAGTAGACCATTGCTTGCTGTGCTGCTGGGGGTGTTTCTTCTAGGTGGAGCACTTTGCTTGGCAAGATGGAGGAAGCCCAAGACGAAGATCATATACGACTTGGAGAAAGGCCGGTACATAATCACACGCATCAGCTGACGCTGACCTTTGTGCAGAGGAATCACATATATATACGACAGGAATAGATGTTTGTTATGTGTACCATAGTGTACGAGTTCAATTCTTTGTATTCTTTCTCCTTTTTAAGAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTAAGGGATGATGGAATAACCTAGCTTTGCTCATGTAaaaaaaaga]
consensusID : consensus_9259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[TGCAGNGGAATCNCATATATATCCGACNGGAANAGATGTTTGTTATGTGTNCCANANTGTNCGAGTTCAATCCTTTGTATCCTTNCNCCTTTTTAANAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAAAAAAAAAAAA]
[+] EMBL OSC5841 [TGCAGNGGAATCNCATATATATCCGACNGGAANAGATGTTTGTTATGTGTNCCANANTGTNCGAGTTCAATCCTTTGTATCCTTNCNCCTTTTTAANAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAGGACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9259#0 TTAATAAAAAATAAAGCTCGTCGTCGTCGCCGTCTCCCTCGCCGCCGACGAGTCAAAGAG 60
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GCGGCGGCGGTGCCGGTACCGGCCGGGCGCGCCCCGGCCGTGTCCCCGCCATGCCCGACC 120
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 TCACCAAACCCCCTTCCCCTCGCCCCCGCCGCCGCCGCTGCCGCCTCTGCGGCATCTGCC 180
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 TCGGCACCGCGCTCCTCGCCCTCCTCGTCTCCTCCCTCGCCCACCTCTTCTCCCCGCCGC 240
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AGCCACAGCCGCAGCTGCAGCCGCCGCGGCCCTCCCCCTCCTCCTCGCCACCGCGCTTCG 300
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CGGTCATCATCGACGGGGGGAGCACCGGCAGCCGGGCGCACGTCTTCGCCACGGGGCCCG 360
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GCGGGCGGCCGGATCTGGCGCGGTCGGCCGTGATGCGCGTCACCCCGGGGCTCTCCTCGT 420
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 TCGCCGACGAGCCCGCGCGGGCCGGGGATTCGCTGCGGCCGCTGATTGATTTCGCCAGGG 480
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AGAAGGTCGGGGGCGCCGCGGCGGAAGTGCGGCTCATGGCCACCGCCGGGCTGCGGCTGC 540
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AGGAGGGGCGCCTCCAGGAGGCCATCCTGTCGTCCTGCAGGGACGTGCTCAGGGCTTCCG 600
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GATTCCGGTTCGAGGACTCTTGGGCCGAGGTGATCCCAGGCTCTGATGAGGGTATCTATG 660
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CTTGGGTTGCGGCAAACTATGCTCTTGGCACACTTGGAGGGGATCCACACAAAACCATTG 720
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GAATAATTGAACTTGGGGGCGCCTCAGCACAGCTGACATTTGTTTCTGATGAAGTACTTC 780
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACA 840
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GCTTTCTAAACTTTGGACAAAATGCTGCACAAGAATCCTTCCGTGAAATACTGCGGTCAA 900
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AAGACTCCAAAAATGGTACACTTGTTGATCCATGTGCTCCTAAAGGATATTCTCGCATCA 960
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AAGAAGTAATATCAAGACCAAGCAGTGCTTCAAAATCAAAATTAGAGAATCAATTTGCTG 1020
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 ATAGTGGGGATGGAGACTTTACAGTGTGCAGATCTTCTTCTTTGGCACTGCTGAAAAAAG 1080
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GCAACGAAGAGTGCCGATATCAACAATGCCAACTTGGACCAACTTTTGTACCTGAGCTTC 1140
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GTGGACATTTCTTAGCAACTGAAAATTTCTATTTTACATCAAAGTTCTTTGGACTGAAGC 1200
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 AATCTTCATCACTGTCTGATTTTGTGCTTGCTGGAGAACAATTTTGCAACAAGGACTTGT 1260
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CTACTCTTAGGAAAATGTATCCTAATCGGTCAGATGATGATTTTTCACGTTATTGCTTCT 1320
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CATCCGCATATATTGTAGCTCTACTGCACGACAGTCTTGGTGTACCACTGGATGACAAGA 1380
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GGATTGAGTATTCAAATCAGGTTGGAGACACTCAAGTTGAATGGGCCCTGGGGGCTTTCA 1440
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 TCTCAAACATAAAAGGCGTAATTGTAGAGCCATCAGCAACTGGTAGATCAGCCCATAGAA 1500
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 GTAGACCATTGCTTGCTGTGCTGCTGGGGGTGTTTCTTCTAGGTGGAGCACTTTGCTTGG 1560
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 CAAGATGGAGGAAGCCCAAGACGAAGATCATATACGACTTGGAGAAAGGCCGGTACATAA 1620
consensus_9259#1 ------------------------------------------------------------
consensus_9259#0 TCACACGCATCAGCTGACGCTGACCTTTGTGCAGAGGAATCACATATATATACGACAGGA 1680
consensus_9259#1 -----------------------------TGCAGNGGAATCNCATATATATCCGACNGGA 31
***** ****** ********* **** ***
consensus_9259#0 ATAGATGTTTGTTATGTGTACCATAGTGTACGAGTTCAATTCTTTGTATTCTTTCTCCTT 1740
consensus_9259#1 ANAGATGTTTGTTATGTGTNCCANANTGTNCGAGTTCAATCCTTTGTATCCTTNCNCCTT 91
* ***************** *** * *** ********** ******** *** * ****
consensus_9259#0 TTTAAGAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAG 1800
consensus_9259#1 TTTAANAGCTGGGTGGGAGCCTTAGAGGAGAGATCAAGGATAGCATGTGTGTATGTACAG 151
***** ******************************************************
consensus_9259#0 GACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAGC 1860
consensus_9259#1 GACTTGTAGAGCATTTTGCCATTTACTTATTCTATTTATTTGATGATGGAATAACCTAAA 211
**********************************************************
consensus_9259#0 TTTGCTCATGTACGTGATATG 1881
consensus_9259#1 AAAAAAAAA------------ 220
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||