These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 845 fasta sequence [TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAG-TAGATCAG-ATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTCTTCAGTCCA] [+] EMBL CF292866 [TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAG TAGATCAG ATTGCATCAAAGATGACTGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCTTTTTTCTAGAGAATCCTACCATTTTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATACCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAG ] [+] EMBL CB682707 [ CGAGCATCTGGGAGTCCTTTGAAAAATTGCTTGAATTTCTAGCTAGATCAGCATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAATATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAAAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCAT ] [-] EMBL AK063875 [ ATTGCTTGAATTTCTAG TAGATCAG ATTGCATCAAAGATGACAGTGATGATGTACAATGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCG ] [-] EMBL AA751087 [ atTGCATGTATCAGAAG NNATTTTACTAGAGAATCCTACCATTATATTCATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTAAATAATAGCCCGATGCCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTCAATTA ] [-] EMBL CF292865 [ GCAAGTCGTGTTACATATGTAGCAGCAATGGCTGTGAATAATAGCCCGATACCCAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCTCTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATCCTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGCCATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAACCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAACCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAGCTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTGCTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTACAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTCTTCAGTCCA] consensusID : consensus_9286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GGACCTCCAATCTTGCATTCACTAGTACAAATCAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGACCTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGTCCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTGGTCAGCGGCGGGTCGCCGGTCCTTGCTGCTGCCGCCGCCCTGACCGCCGCCGCCGAGGCGGAAGGGGACGTTGGGCGAGGCCTTGCGGAGCGTGGCCTTGTCGGGGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC] [-] EMBL CB682706 [GGACCTCCAATCTTGCATTCACTAGTACAAATCAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGACCTGGGTGAGGAAGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGTCCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTGGTCAGCGGCGGGTCGCCGGTCCTTGCTGCTGCCGCCGCCCTGACCGCCGCCGCCGAGGCGGAAGGGGACGTTGGGCGAGGCCTTGCGGAGCGTGGCCTTGTCGGGGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9286#0 TTTTTTGCATAAGAGAGAGATTTAGCATTGCATGCCAACGAGCATCTGGGAGTCCTTTGA 60 consensus_9286#1 --------------------------------------------------GGACCTCC-- 8 * *** consensus_9286#0 AAAATTGCTTGAATTTCTAGTAGATCAGATTGCATCAAAGATGACAGTGATGATGTACAA 120 consensus_9286#1 AATCTTGCATTCACTAGTA-CAAATCAAGC-ATATCCAGCAGGGCCATAACCAT---CAA 63 ** **** * * * ** * **** *** * * * * * * ** *** consensus_9286#0 TGGGCTAGTATGCTAGTATCAGAAGGCCGCATTTTACTAGAGAATCCTACCATTCTATTC 180 consensus_9286#1 TGAACCCGGAGACCTGGGTGAGGAAG--GTGTT---------GATCTGGTCCTTGTACAC 112 ** * * * * * * ** * * * ** *** * ** ** * consensus_9286#0 ATCGATCTCCTTTACAGCATCCTTTGCAAGTCGTGTTACATATGTAGCAGCAATGGCTGT 240 consensus_9286#1 GTATCCCGCCGCCCCGAACCCCCCTACGACTCCAACCAGCAGCGCCCCGGCGAGGAGCGT 172 * * ** * ** * * * ** * * * ** * * ** consensus_9286#0 G--AATAATAGCCCG-ATGCC-CAGTGTCAGTAGCTGGCTGTTTCCTCCCAAACCGATCT 296 consensus_9286#1 CCCGGTGATGGCCCCCGCGCCGCCGTCTCCGTTATCCTCCGCCGCCTCC----TCCTCCT 228 * ** **** *** * ** ** ** * * ***** * ** consensus_9286#0 CTGACTCATCTTGAATTATAGCTCGTCCAAATGCACCAGCACTGACATAGGCCCATGATC 356 consensus_9286#1 CCTCCTCCTCCTGGTCAGCGGCGGGT-------CGCCGGTCCTTGCTGCTGCCGCCGCCC 281 * *** ** ** ** ** * ** * ** * *** * * consensus_9286#0 CTGGAAGCATTCCCAACCAACTTCCCAAGACATAAGGCAAGAACTTCACTGAAGTCAAGC 416 consensus_9286#1 TGACCGCCGCCGCCGA--GGCGGAAGGGGACGTTGGGCGAGGCCTT--GCGGAGCGTGGC 337 * ** * * *** * *** ** *** * ** ** consensus_9286#0 CATACAAGTAGTTCCCAAGAGAGAAAGGTAATAGGGGACTAAGCCGCAGCAGAGTAACAA 476 consensus_9286#1 CTTGTCGG-GGTCACGCAGCGACGAGAGCGGCGGGTGGAACGCCCGC------------- 383 * * * ** * ** ** * * ** * **** consensus_9286#0 CCTTAAATCCATTTTCACCTATTGCTTTGTCAATTGCCAGAAACTTCTTGTTTCCTTCAA 536 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 CCAATTTGAGAATTCGCTCTCTGGCAAAGTATCTAGCAATAAGAAAGGCCACTGCTGCAG 596 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 CTAGTGTCCCGCTGATTGAGACAATAACTGTACCAGTAATACTACCAAACAATAGACCTG 656 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 CTGACATTGTTAATGGTATCGCTGGAATCGCAAGGACCTCCAATCCTGCATACACTAGTA 716 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 CAAATAAAGCATATCCAGCAGGGCCATAACCATCAATGAACCCGGAGAACTGGGTGAGGA 776 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 AGGTGTTGATCTGGTCCTTGTACACGTATCCCGCCGCCCCGAACCCCCCTATTTCTACTC 836 consensus_9286#1 ------------------------------------------------------------ consensus_9286#0 TTCAGTCCA 845 consensus_9286#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||