These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1025 fasta sequence [GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCCGGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTCCGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGACGACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTGCTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG-CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA-TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCATTTAAGCGATCAAAAAAAAAA] [+] EMBL AK101799 [GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCCGGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTCCGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGACGACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTGCTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT ] [+] EMBL CA765532 [ ACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCTGAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATAATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCGGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGNGATGGTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTTGCTGCTCGANGGGTTCATTTGAATATTGAATCATGAAANCGATATG ] [+] EMBL CB096378 [ cATCAAATGAAATTGATATCCGAGGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCTTCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCATCAACTTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAG CCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACA TTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATAGGCATTTAAGCGA ] [+] EMBL AU068374 [ AATGAAGGTGAGCCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGANCTGTGATGTTTCTTGTCAACNCTAAGAAAAATGATTTAGTTTACA TTTGCTGCNCGAGGGGNTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGNATTTAAGCGATCAAAAAAAAAA] consensusID : consensus_9292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANCTNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT] [+] EMBL AA751619 [GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANCTNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAGTGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAATCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGATGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTGTGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCTGCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATGTTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT] consensusID : consensus_9292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [ACGAAACCCCAAAATTTTCTNAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGNGGCGTACGCGNTGNAATCAGGTTCCNGCGGCGGACTGNNTCCACCCNCGNNCTCCCATGAGCGATCTCCGCGAACTCNGCATNNGGCGGGAGCTCCG] [+] EMBL AU108663 [ACGAAACCCCAAAATTTTCTNAGGGAAGCAAGCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGNGGCGTACGCGNTGNAATCAGGTTCCNGCGGCGGACTGNNTCCACCCNCGNNCTCCCATGAGCGATCTCCGCGAACTCNGCATNNGGCGGGAGCTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9292#0 GCCTCTCGCTCTCTCCGACGAAACCCCAAAATTTTCTGAGGGAAGCAAGCGGCGGCGCAC 60 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 GGAGTCCCCTCCCTCCCCAATCTGCAACGAACTCGAAGGGCGGCGGCGGCGGCGTACGCC 120 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 GGTGAATCAGGTTCCCGCGGCGGAGCCGTGCTCCACCCCCGCGCTCCCATGAGCGATCTC 180 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 CGCGAACTCGGCATGCGGCGGGAGCCGTCGAGGGCTGAGGTGGTGGGGCGTGCCAAGGAC 240 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 GACGGGGACTTCGACGCGCTCCGCCGCGCCATCATCCGCAAGGTCAAGGACAACGAGGTG 300 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 CTACGCAGCAACATAATTGCAGAGGTGAAGCAGTCAGTGGTAATAAATGAAGATGGCTCT 360 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 GAAAAGTTAAAGCTGAAAGATCTTTCTGATGCGATTTACCAAGATATCGGGAGCAAAATA 420 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 ATGGGTCAAATCTCAGACGAGATATGGGGTGTCATCCTATCAAATGAAATTGATATCCGA 480 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 GGAACTTCTGAAACTGTCTACAATAGAATGATGAACCCTGAGCAGCAGCAGGACCCTCCT 540 consensus_9292#1 ------------------------------------------------------------ consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 TCAAAGAAACTGAAGAGGAATGCCAAAGAGGAGCAAGTGTCCCCAGCAAAAGCA-TCAAC 599 consensus_9292#1 -------------------------GGAAGCCGACAGGGTGCTCACCGTGAGCCCNCANC 35 consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 TTCTGTTGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAG 659 consensus_9292#1 TNCTGTAGCAGTCCAGCTGGAAGATGATGATCCAGAGGAACCACCAGGATTTGGTTTCAG 95 consensus_9292#2 -----------------------------------ACGAAACCCCAAAATTT--TCTNAG 23 * *** * *** **** * * ** consensus_9292#0 TGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAA 719 consensus_9292#1 TGATCATCAGCGCAGCAACATCATGGCAACTCAGCAGCAGCAGTCGTCAAATACTGAGAA 155 consensus_9292#2 GGA--AGCAA-GCGGCGGCGCACGGAGTCCCCTCCCTCCCCAATC------TGCAACGAA 74 ** * ** ** ** * * * * * * ** ** * * *** consensus_9292#0 TCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGA 779 consensus_9292#1 TCATAACCAAGTGAAACCAAATGAAGGTGAGCCCAACGCCGTTAGCTGCCCTGGGGATGA 215 consensus_9292#2 CT----CGAAGGGCGGC--GGCGGNGGCGTACGCGNTGNAATCAGGTTCCN--------G 120 * *** * * * ** * * * * * ** * ** consensus_9292#0 TGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTG 839 consensus_9292#1 TGATGAGGAGGATCCTGATGTGCCTCCTGGGTTTGGTTAACATCCTGCAATCTTCTATTG 275 consensus_9292#2 CGGCGGACTGNNTCCACCCNCGNNCTCCCA---TGAGCGATCTCC-GCGAACTCNGCATN 176 * * * *** * * ** * *** ** * ** * consensus_9292#0 TGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCT 899 consensus_9292#1 TGGTGTGATCTGTGATGTTTCTTGTCAACACTAAGAAAAATGATTTAGTTTACATTTGCT 335 consensus_9292#2 NGGCGGGAGCTCCG---------------------------------------------- 190 ** * ** ** * consensus_9292#0 GCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATG 959 consensus_9292#1 GCTCGAGGGGTTCATTTGAATATTGAATCATGAAACCGATATGATTGGGATGAGTTCATG 395 consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 TTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCATTTAAGCGATCAAAA 1019 consensus_9292#1 TTGCTCCTAGCTTCAGCCTCTTATTTATGAGGGAACAAATGGGCAT-------------- 441 consensus_9292#2 ------------------------------------------------------------ consensus_9292#0 AAAAAA 1025 consensus_9292#1 ------ consensus_9292#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||