These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 789 fasta sequence [ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCACCTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGGCGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGGATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGCGGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTGCAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCCCCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGCCGCCGCCGCCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACAT--ATG---ACAATTTTATGAGAAATTTTTTTAGTATAAAAAAAAAAGG] [+] EMBL AK068443 [ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCACCTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGGCGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGGATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGCGGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTGCAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCCCCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGCCGCCGCCGCCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACGT ATG ACAA ] [+] EMBL AU029920 [ cgCCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTCGAGCTCTATCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGTCNCCTCC CCGCGGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACAT ATGACAACAATTTTATGAGAAATTTTTTTAGTATAAAAAAAA ] [-] EMBL CB681583 [ GGCGTACTAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACATAAAGG ACAATTTTATGAGAAATTTTTTTAGTATAAAACAAAAAGG] consensusID : consensus_9311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GTCTGCAACCACAACTTGCTTGGGCCTAGCAGCCAGGGCGGCAATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCTAGCAACGCCTTGGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTAGCCAACCGCCTAGCACAGCACAGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGAAGAACATATTCAAGATGTCCCTTCTTTGTTTTCTTTCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTGACAAGATTATTGGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCAGGCATTGCCCCATGTACTATGACAACATAGCCCACAATTTTATGAGAAATTTTTTTAGTATAAAAA] [+] EMBL BI797266 [GTCTGCAACCACAACTTGCTTGGGCCTAGCAGCCAGGGCGGCAATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCTAGCAACGCCTTGGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTAGCCAACCGCCTAGCACAGCACAGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGAAGAACATATTCAAGATGTCCCTTCTTTGTTTTCTTTCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTGACAAGATTATTGGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGAGCGATTCATCCTGTCATCAGGCATTGCCCCATGTACTATGACAACATAGCCCACAATTTTATGAGAAATTTTTTTAGTATAAAAA] consensusID : consensus_9311#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [GCTCCCCGCGGGGCTCTGCACCCACTTTTGCCTCGCCATGGGCTCAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCTGGCTCAACCAGCCTTTCCAGGCACGCACAGGTAGCCACCCTGCCGCCGCACAGCCAGCCAGCAGGCGTACTAATGTACTAAAGCTACCAGGCCTTGATGCGTCCAGATTCTTGCTCGTGAAGAAGAGCCAACGAAGCGTGCAGATTGCAACGGAGAGAACATATTGCAGATTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAATGCGGATGTTGTACAGATTATTGGTTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGACGATTCATCCTTCATCCCAAAAAAAAAA] [+] EMBL BI813369 [GCTCCCCGCGGGGCTCTGCACCCACTTTTGCCTCGCCATGGGCTCAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCTGGCTCAACCAGCCTTTCCAGGCACGCACAGGTAGCCACCCTGCCGCCGCACAGCCAGCCAGCAGGCGTACTAATGTACTAAAGCTACCAGGCCTTGATGCGTCCAGATTCTTGCTCGTGAAGAAGAGCCAACGAAGCGTGCAGATTGCAACGGAGAGAACATATTGCAGATTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAATGCGGATGTTGTACAGATTATTGGTTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGACGATTCATCCTTCATCCCAAAAAAAAAA] consensusID : consensus_9311#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TGGGGCCNGCGGGATGNTNTGTACTAATGTACTAAAGCTACCGGCCTTGATGCNTCCGATTCTTGCTGTGAAGAAGACAAACNAANCGTGCAGANNGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGANCGATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTTATGAGAAATTTTTTTAG] [+] EMBL AA753213 [TGGGGCCNGCGGGATGNTNTGTACTAATGTACTAAAGCTACCGGCCTTGATGCNTCCGATTCTTGCTGTGAAGAAGACAAACNAANCGTGCAGANNGCAACGGAAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGATTATTGGTTGCGAATTTGCAATTTGCTACCTCGATTATTCCAACGAGGANCGATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTTATGAGAAATTTTTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9311#1 ------------------------------------------------------------ consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 ATGAGGGAGTCGATCGCAGAGATCGTGCGGCACATCGGGGAGGCGCCGTTCCTGGTGCAC 60 consensus_9311#2 ------------------------------------------------------------ consensus_9311#1 ------------------------------------------------------------ consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 CTGTTCAACGACGACGACGGCGGCAGCGGGCGGGGAGGCGCGGGGCGCGTGACGGTGCGG 120 consensus_9311#2 ------------------------------------------------------------ consensus_9311#1 ------------------------------------------------------------ consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 CGGGAGACGGCGTCGGCGGAGAGCTGGCCCGACGTGCGGCGGCGGTGGGGCCCGGGCGGG 180 consensus_9311#2 ------------------------------------------------------------ consensus_9311#1 ------------------------------------------------------------ consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 ATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGC 240 consensus_9311#2 ------------------------------------------------------------ consensus_9311#1 ------------------------------------------------------------ consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 GGCGCGTCCGCCGGCGCCGGCGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTG 300 consensus_9311#2 ------------------------------------------------------------ consensus_9311#1 -----------------GTCTGCAAC-CACAACTTGCTTGGGCCTAGCAGCCAGGGCGGC 42 consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 CAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCGACACCTGCCGCGTCCGCTCC 360 consensus_9311#2 -----------------------------GCTCCCCGCGGGGCTCTGCACCCACTTTTGC 31 consensus_9311#1 AATGTGCTGTGCGGCAGACCCACCTGCGGAGCTGCCAAGCTGCGCT---AGCAACGCCTT 99 consensus_9311#3 ------------------------------------------------------------ consensus_9311#0 CCGGCGGGGCTCTGCACCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTC 420 consensus_9311#2 CTCGCCATGGGCT-CAGTGCTTCGGCAGACCCCCTCGAGCTCCAGCTCACGCAACAGCCT 90 consensus_9311#1 GGCTGCAAACCGCCTGCTGCACAGGCCACCCAGGTGTA-GCCAACCGCCTAGCACAGCAC 158 consensus_9311#3 ---------------------------------------------------------TGG 3 consensus_9311#0 GAGCTCCAGCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGC-C 479 consensus_9311#2 GGCT-CAACCAGCCTTT--------CCAGGCACGCACAGGTAGCCACCCTGCCGCCGCAC 141 consensus_9311#1 AGCACAGCACGCGGCGTGACTGAATGTGACTAAAGCTGACCGGCCTTGATGCGTCC-GAT 217 consensus_9311#3 GGCCNGCGGGATGNTNTGTACTAATGT-ACTAAAGCT-ACCGGCCTTGATGCNTCC-GAT 60 consensus_9311#0 GCCGCCGCCGCCGCGGCGTACTAATGT-ACTAAAGCT-ACCGGCCTTGATGCGTCC-GAT 536 consensus_9311#2 AGCCAGCCAGCAGGCGTA--CTAATGT-ACTAAAGCTACCAGGCCTTGATGCGTCCAGAT 198 * * ***** ********* * *********** *** *** consensus_9311#1 TCTTGCT-GTGAAGAAGAGCCAACGATAGCGTGCAGATTGCAACGGA-AGAACATATTCA 275 consensus_9311#3 TCTTGCT-GTGAAGAAGA-CAAACNA-ANCGTGCAGANNGCAACGGA-AGAACATATTCA 116 consensus_9311#0 TCTTGCT-GTGAAGAAGAGCAAACGA-AGCGTGCAGATTGCAACGGA-AGAACATATTCA 593 consensus_9311#2 TCTTGCTCGTGAAGAAGAGCCAACGA-AGCGTGCAGATTGCAACGGAGAGAACATATTGC 257 ******* ********** * *** * * ******** ******** ********** consensus_9311#1 AGATGTCCCTTCTTTGTTTTCTT-TCGTTCCCAGGTTTCTCCCAAAATGCGGATTTGGTG 334 consensus_9311#3 GA---TTCTTTCTTTGTTTTCTT-TCGTTCC--GGTTTCTCCCAAA-TGCGGATTTGT-- 167 consensus_9311#0 GA---TTCTTTCTTTGTTTTCTT-TCGTTCC--GGTTTCTCCCAAA-TGCGGATTTGT-- 644 consensus_9311#2 AGA--TTCTTTCTTTGTTTTCTTGTCGTTCCAGGTGTTCTCCCCAA-TGCGGATGTTGT- 313 * * ************** ******* * ******* ** ******* * consensus_9311#1 ACAAGATTATTGGGTTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGAGC 392 consensus_9311#3 ACA-GATTATTGG-TTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGANC 223 consensus_9311#0 ACA-GATTATTGG-TTGCGAATTT--GCAATTTGCTACCTCGATTATTCCAACGAGGAGC 700 consensus_9311#2 ACA-GATTATTGG-TTGCGAATGTTGGCACATTTCTACCTCGATTATTCCAACGAGGA-C 370 *** ********* ******** * *** ** ************************ * consensus_9311#1 GATTCATCCTGTCATC-AGGCATTGCCCCATGTACTATGACAACATA-GCCCACAATTTT 450 consensus_9311#3 GATTCATCCTGTCATCGAGGCATTGCCCCATGTNCTATGACAACATATGACAACAATTTT 283 consensus_9311#0 GATTCATCCTGTCATCGAGGCATTGCCCCATGTACTATGACAACATA---TGACAATTTT 757 consensus_9311#2 GATTCATCCT-TCATC-----------CCAAAAAAAAAA--------------------- 397 ********** ***** *** * consensus_9311#1 ATGAGAAATTTTTTTAGTATAAAAA------- 475 consensus_9311#3 ATGAGAAATTTTTTTAG--------------- 300 consensus_9311#0 ATGAGAAATTTTTTTAGTATAAAAAAAAAAGG 789 consensus_9311#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||