These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1707 fasta sequence [CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG-GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCAGCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGATCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCTTCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGGTTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAAGTAAACGAAAGCCAGCTGAATTCTGGC] [+] EMBL OSS13437A [CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGNTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCAGCG ] [+] EMBL OSS12565A [ ACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG NCTACGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCNACGACGGGACGGACTCGNCGCCGCCGCTGATGATGCAGGNGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTNGTNGGNGCGCTGCGGAGGTCGCTGGTGATGTTCAG TCCGGGAA ] [+] EMBL OSS12673A [ ACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCG GCTNCGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTGGGGGCGCTNCGGAGGTCG ] [+] EMBL AK101984 [ CGCAGTCCGCACCCGCGCGCGCGCGCT CGACTCCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCTCGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGGAGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGGGAGGGGGAGGGCTGGTCGGGGCGGTGGTGGGGGCGCTGCGGAGGTCGCTGGTGATGTGCAGCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGATCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCTTCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGGTTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAAGTAAACGAAAGCCAGCTGAATTCTGGC] [+] EMBL CF197194 [ GCCAGTGTAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATAGCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGATCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAACTAAACAGTGGTGTGATTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGGCATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGCATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCGCATTACTCGATTGGGCTACCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACAAGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCCTGATACATGCAGTTCANNTCATGAATTTCnnnnnn ] consensusID : consensus_9332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAAAAA] [-] EMBL CA763144 [CGCCAAACATGACTCAGATGGCCGATCCATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGAAGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTTCTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTTCAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGTTTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGCATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATAACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACAAATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTAGGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAGCTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTTTCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9332#0 CACCCGCCTCGTTCGCTTCCATCCTCTCCGCAGTCCGCACCCGCGCGCGCGGCTNCGACT 60 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 CCCGCACCAGCCGCGTCATGGCGCCATTCCAGCTGCGCTTCGGCCTCCGGATGTCCCCCT 120 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 CGCGCTCCTCCGACGAGGAGGAGGAAGACGACGAGGACGAGGAAGGGTTCGAGTACGAGG 180 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 AGATACTGAGCGACGACGGGACGGACTCGCCGCCGCCGCTGATGATGCAGGCGGAGAAGG 240 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 GAGGGGGAGGGCTGGTCGGGGCGGTGGTNGGGGCGCTNCGGAGGTCGCTGGTGATGTNCA 300 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 GCGCCGGGAAGGTCGGGGAGGAGGAGGACAGCGAGGACGAGGAAGAGGAGGGGATGGAGA 360 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 TCGGGCGGCCCACGGACGTGCGGCACGTCTCCCACGTCACCTTCGACCGCTTCGGCGGCT 420 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 TCCTCGGCCTCCCCGCCGACCTCGAGCCCGAAGTTCCCAGCCCCACGCCCAGCGCCAGTG 480 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 TAAATGTATTTGGTGTTTCACCAACCTCTTTGCAATGTTCATTTGATCACAAAGGAAATA 540 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 GCGTGCCCACAATACTGTTGATGATGCAGAGGAAGTTGTATGAACGAGAGGGACTTAAGA 600 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 TCGAAGGGATCTTCAGAATTAACGCAGAGAATAGCCAGGAAATCTGTGTCAGGAAACAAC 660 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 TAAACAGTGGTGTGGTTCCAGATGAGGTTGACTTACACTGCCTTGCAGGGTTGATAAAGG 720 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 CATGGTTTCGGGAACTCCCAACCGGTGTATTGGACTCACTGACACCGGAACAAGTAATGC 780 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 ATTGCAACACAGAAGAGGACTGTGCTCTCCTTGCTTCAATGCTACCACCAGTGGAAGCCG 840 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 CATTACTCGATTGGGCTATCAATCTGATGGCTGATGTTGTGGAGCATGAAAACTACAACA 900 consensus_9332#1 ------------------------------------------------------------ consensus_9332#0 AGATGAATGCTAGAAACATCGCTATGGTCTTTGCGCCAAACATGACTCAGATGGCCGATC 960 consensus_9332#1 ---------------------------------CGCCAAACATGACTCAGATGGCCGATC 27 *************************** consensus_9332#0 CATTGACTGCCCTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGA 1020 consensus_9332#1 CATTGACTGCCNTGATACATGCAGTTCAGGTCATGAATTTCCTCAAGACATTGATCTTGA 87 *********** ************************************************ consensus_9332#0 AGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTT 1080 consensus_9332#1 AGACTTTAAAGGAAAGAGAGGCAGCCGGAACACCTAAGACAACGGAACCATGCTCCGGTT 147 ************************************************************ consensus_9332#0 CTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTT 1140 consensus_9332#1 CTCCAAACGGACAAGATAAACCTCCGACGCCAGAGAATTTGGAGAGACCCATCATTTGTT 207 ************************************************************ consensus_9332#0 CAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGT 1200 consensus_9332#1 CAGATCAGAAAGGCATAGATAAACCTATGTTTGATATGGCTACTTGTGATCAGCTGCTGT 267 ************************************************************ consensus_9332#0 TTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGC 1260 consensus_9332#1 TTGGACCTAAACAATTCCTTGATCATCGTGAGAACAACAAATTTGAAGGACCGGAGAAGC 327 ************************************************************ consensus_9332#0 ATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATA 1320 consensus_9332#1 ATGACATAGGCCAACCGAAGCGCCATAGCGAAGCTTCTCCTCTTGGTAATGATTCGAATA 387 ************************************************************ consensus_9332#0 ACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACA 1380 consensus_9332#1 ACCAAGTCAGCAGCCCTGGAAAAGAATTTGGCAACAGAAATGTGGAAGGCCTGTTCGACA 447 ************************************************************ consensus_9332#0 AATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTA 1440 consensus_9332#1 AATTTAGTTTTAGGAAAGGTGTCGAGAGGCTTTGCAGGCACCCTGTGTTCCAGTTGAGTA 507 ************************************************************ consensus_9332#0 GGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAG 1500 consensus_9332#1 GGTCCATGAAGAAGTCTGCAGACGTTGTGGTCTTTGATGCTCCTGGAGAAGCAAGACAAG 567 ************************************************************ consensus_9332#0 CTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTT 1560 consensus_9332#1 CTTGGGGTTTGATATGATAATGGTTGTATATGTAGTTGGTGTGGATGTAATGCTATCTTT 627 ************************************************************ consensus_9332#0 TCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTATAGGTGCTGCAGG 1620 consensus_9332#1 TCTCTGTCTTGTTTGTGTGAGCAGAAGCGATTAGCATGTTAGATTTAAAAAAAAAAAAAA 687 *********************************************** * * consensus_9332#0 TTGTTGTGTGCATTATAACCATTTACTTCTGACGAAAGCGTCTGCCTGTGGCTGCTACAA 1680 consensus_9332#1 AAA--------------------------------------------------------- 690 consensus_9332#0 GTAAACGAAAGCCAGCTGAATTCTGGC 1707 consensus_9332#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||