These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence [TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATATCTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG-GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA-GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACACTGGGTGCTCTG] [+] EMBL AK101654 [TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATATCTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACACTGGGTGCTCTG] [+] EMBL AU029338 [ TCTCTCTTCTCCACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGNGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTGNGAGCCGAGGACCAAGGCAACCCATGAATTCGATANATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGAGTTGCATAGAT TCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTANGCAGTATATACAnt ] [+] EMBL CB678944 [ ACATCCCCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAGGAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCGGCCCGTCCCGGCAGCACAACGCCATTG GAGCCGAGGACCAAGGCAACCCATGAATTCGATACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTA GCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCT ] consensusID : consensus_9337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [GAGAGAGAGAGATCAGAGTTNCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCNCATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029339 [GAGAGAGAGAGATCAGAGTTNCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCNCATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9337#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA] [+] EMBL AU092676 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATTGTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTATATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA] consensusID : consensus_9337#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [ACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCC] [+] EMBL C27777 [ACATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGCTGCAGGCGTCGAGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGAGAGAGGCGTCTCCAACAACTTCTTCGGGTTCTTGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9337#0 TTGTCACACATATATCCTTTTATACTACTCCTCTGTCCCTCCTCTCCCTAACCAATATAT 60 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 CTCCACCCCTCTTCTCCCCTCACTCACCATTTGCTCTCTTCTCTCTTCTCTCTTCTCCAC 120 consensus_9337#3 ----------------------------------------------------------AC 2 consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 -----------------------------------------------------------G 1 consensus_9337#0 ATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATC 180 consensus_9337#3 ATCACCACAGCCACACCACACTAGCTAGTGTTCATCATCATCATCATCATCATCATCATC 62 consensus_9337#1 -------------------GAGAGAGAGAGATCAGAGTTN-CATAGATATCATCGAAATT 40 consensus_9337#2 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGAGTTG-CATAGATATCATCGAAATT 60 ** ** * *** * *** ****** ** consensus_9337#0 T-TCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCT 239 consensus_9337#3 T-TCTTCTTCTTCTTCTTCTTCTTCCTCGCTTCGTTTTGCTAGCTCGATCGTGTCTAGCT 121 consensus_9337#1 AATCTTCTTGGTTAATTAATTGTAGCTAGC--------ACTAGCAGTAGCNCATGTAG-T 91 consensus_9337#2 AATCTTCTTGGTTAATTAATTGTAGCTAGC--------ACTAGCAGTAGCACATGTAG-T 111 ******* * * ** * ** ** ***** * * * *** * consensus_9337#0 GGTCGTCGTCGTCGTCGTCGTCTTCGCCATGGCCGGCTGTTTGCAGACGAGAAGCAGGAG 299 consensus_9337#3 GGT--------------------------------------------------------- 124 consensus_9337#1 AGT--------------------------------------------------------- 94 consensus_9337#2 AGT--------------------------------------------------------- 114 ** consensus_9337#0 GAGGAGGAGGCGGCCATGGTGGTGGCTGGTGGTAGCGGCGCTGCTGCTGCTGCTGC-TGC 358 consensus_9337#3 ------------------------------GGTAGCGGCGCTGCTGCTGCTGCTGC-TGC 153 consensus_9337#1 ------------------------------AGTAGTAGTAC-GTAGCAGTAGCAGTATAT 123 consensus_9337#2 ------------------------------AGTAGTAGTAC-GTAGCAGTAGCAGTATAT 143 **** * * * ** * ** * * consensus_9337#0 AGGCGTCG--AGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGA 416 consensus_9337#3 AGGCGTCG--AGCTGCGAGGCGACGCGAGGCATGCAGCCGTTCAAGGGGAGGCCGCTGGA 211 consensus_9337#1 ACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAA 183 consensus_9337#2 ACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATCAA 203 * * *** * ** ** * * ** ** * * ** ** * * * consensus_9337#0 GAGAGGCGT-CTCCAACAACTTCTTCGGGTTCTTGCCCCGTGGCCCCGCGCCGCCGTCCG 475 consensus_9337#3 GAGAGGCGT-CTCCAACAACTTCTTCGGGTTCTTGCCCC--------------------- 249 consensus_9337#1 GGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCTGT 243 consensus_9337#2 GGATGATGTACATGAAGAAGCTTTTTTTTCTTTTACAAAAAAAAAAA------------- 250 * * ** * ** ** * ** * ** * consensus_9337#0 GCCCGTCCCGGCAGCACAACGCCATTGGAGCCGAGGACCAAGGCAACCCATGAATTCGAT 535 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 CAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAAAAAA 303 consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 ACATGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 595 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 324 consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 AGAGAGAGAGATCAGAGTTGCATAGATATCATCGAAATTAATCTTCTTGGTTAATTAATT 655 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 GTAGCTAGCACTAGCAGTAGCACATGTAGTAGTAGTAGTAGTACGTAGCAGTAGCAGTAT 715 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 ATACACTTCGGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGGTATAGTACAGTAGGATC 775 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 AAGGATGATGTACATGAAGAAGCTTTTTTTTCTTTTCCTTTTTTTTGGGTAGGGCTCTCT 835 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 GTCAAATGTGTTGGCTGTTCATGGCATTCTCTTCTCTTTTGGAAAAAAAAAACACAAACA 895 consensus_9337#3 ------------------------------------------------------------ consensus_9337#1 ------------------------------------------------------------ consensus_9337#2 ------------------------------------------------------------ consensus_9337#0 CTGGGTGCTCTG 907 consensus_9337#3 ------------ consensus_9337#1 ------------ consensus_9337#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||