These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 662 fasta sequence [TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCCCTTACGGCGCGAACCAGGGGT-GGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTCGTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGA-GGTCGGCTGCGCCCAGGCCAC-CTGCACCACCGGCGCCACGCTCACCATC-TGCCTC-TACAACCCGCACGGCAACGTGCA-GGGCCAGAGCCCC-TACTGACCGGTCTCTTCGCCG-CCGCCGTCG-CCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTGCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCACCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAAAAA] [+] EMBL AU082529 [TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCCCTTACGGCGCGAACCAGGGGT GGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTCGTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGA GGTCGGCTGCGCCCAGGCCAC CTGCACCACCGGCGCCACGCTCACCATC TGCCTC TACAACCCGCACGGCAACGTGCA GGGCCAGAGCCCC TACTGACCGGTCTCTTCGCCG CCGCCGTCG CCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCTGCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCACCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAAAAA] [+] EMBL AU029886 [ CGGGTTCGCGGACATG AGCGGGA CCCCTACGGCGCGAACCAGGGGTGGGCGAGCTACCCGGCGCGCCCCG GGAGGTGGTGGCGTCGTGGGTGGCGCAGGGGAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCAGTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGG GAANGGTCGGCTGCG CCAGGCCAC CTGCACCACCGGCGCCACGCTCACCATC TTGCTC TACAACCCGCACGGCAACNT AA GGGCCAGAGCC ] [+] EMBL AU029887 [ GCCACNTTGCACCACCGGCGCCACGCTCACCATCTTGCCTCTTACAACCCGCACGGNAACGTGCAGGGGCNAGAGCCCCNTACTGACCGGTCTCTTCGCCGCCCGCCCTCGCCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAGATTTGGACTGAAAAaa ] consensusID : consensus_9347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [CAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCGGCGTGCTTCGTCCTCGCCGCGCTTGCGATGTGGGCGGCGCCGCGGCGTGCGGCGCGCGCGCGGTTTCCTCGTGGGGCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGGACGAGTTCCTGGCGCCGCACAACCAGGCGCGGGCGGCGGTCGGGGTTGCGCCGCTGCGGTTGAACNGCGAACTTGCGG] [+] EMBL AU082528 [CAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCGGCGTGCTTCGTCCTCGCCGCGCTTGCGATGTGGGCGGCGCCGCGGCGTGCGGCGCGCGCGCGGTTTCCTCGTGGGGCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGGACGAGTTCCTGGCGCCGCACAACCAGGCGCGGGCGGCGGTCGGGGTTGCGCCGCTGCGGTTGAACNGCGAACTTGCGG] consensusID : consensus_9347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 244 fasta sequence [ACTCAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACG-CTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA] [+] EMBL AU093400 [ACTCAGCTCACCTACTCCAGATCTCGCCATGGCGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACG CTACGTGGTGTTTAGAGCTGCGTGCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA] [+] EMBL OSR06891A [ CTCAGCTCACCTACTCCAGATCTCGCCATGGTGGCGGCGTCGTCTCGGTGGCAGCGGATGGCCGCCGTCGCCGTCGCCGTCGACGTCGCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGTGTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAGAGCTGCGTGCGTNCTTAAAAAAAAAa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9347#0 TCGCAANAAGCAGGCCGGGCAGGGCCGCCGGTCCGGGTTCCCGGACATGAAGCGGAAGCC 60 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 ------------------------------------------------------------ consensus_9347#0 CTTACGGCGCGAACCAGGGGTGGCAAGCTACCCGGCGCGCCCCGCGNAGGTGGTGGCGTC 120 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 ------------------------------------------------------------ consensus_9347#0 GTGGGTGGCGCAGGGNAGGTACTACGCCCACGCCAACAACAGCTGCGCGCCGGGGCAGCA 180 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 ------------------------------------------------------------ consensus_9347#0 GTGCGGCACCTACACCCAGGTGGTGTGGCGCCGCACGGCGGAGGTCGGCTGCGCCCAGGC 240 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 ------------------------------------------------------------ consensus_9347#0 CACCTGCACCACCGGCGCCACGCTCACCATCTGCCTCTACAACCCGCACGGCAACGTGCA 300 consensus_9347#2 ---------------------ACTCAGC-TCACCTACTCCAGATCTCGCCATGGCG-GCG 37 consensus_9347#1 ------------------------CAGC-TCACCTACTCCAGATCTCGCCATGGCG-GCG 34 ** * ** * ** ** * * * ** ** consensus_9347#0 GGGCCAGAGCCCCTACTGACCGGTCTCTTCGCCGCCGCCGTCGCCGTCGCCGTCGACGTC 360 consensus_9347#2 GCGTCG----TCTCGGTGGCAG-----CGGATGGCCGCCGTCGCCGTCGCCGTCGACGTC 88 consensus_9347#1 GCGTCG----TCTCGGTGGCAG-----CGGATGGCCGCGGCGTGCTTCGTCCTCGCCG-C 84 * * * * ** * * ***** * * *** * *** ** * consensus_9347#0 GCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGT 420 consensus_9347#2 GCCGGAGCGTTGTTGTCGGTTTGCTTTTGTGCTTATTAAGCTTACTAATGTGACTGTGGT 148 consensus_9347#1 GCTT--GCGATGTGGGCGGC--GCCGCGGCGTGCGGCGCGCGCGC-GGTTTCCTCGTGGG 139 ** *** *** * *** ** * * ** * * * **** consensus_9347#0 GTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGCCTACGTGGTGTTTAG-AGCTGCGT 479 consensus_9347#2 GTGTGATCTTGTCTGTGTACTCTTGTGTTATTACGC-TACGTGGTGTTTAG-AGCTGCGT 206 consensus_9347#1 GCGGGGGCGGGGGTGGCGGCGCANAGGCGAACGCGTCGTCGTCGTCGTCGGCGGCGGCGG 199 * * * * * ** * * * * ** *** ** * * ** *** consensus_9347#0 GCGTGCTTAAGATTTGGACTGAAAATGATGGATGTTGTGACGCGCGTGTCAGCACGTGCT 539 consensus_9347#2 GCGTGCTTAAAAAAAAANANANAAAAAAAAAAAACAAA---------------------- 244 consensus_9347#1 ACGAGTTCCTGGCGCCGCACAACCA-GGCGCGGGCGGCGGTCGGGGTTGCGCCGC-TGCG 257 ** * * * consensus_9347#0 GCTTGGAGTGTAGCTTGTGATATGGCTCTTGAATTCGAATGCTAGGTTTGTGTAGATCCA 599 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 GTTGAACNGCGAACTTGCGG---------------------------------------- 277 consensus_9347#0 CCCATGAGCCATGAGCCACAATCACGGGTGTATAAAGCTGTGCTGTGCTAAAAAAAAAAA 659 consensus_9347#2 ------------------------------------------------------------ consensus_9347#1 ------------------------------------------------------------ consensus_9347#0 AAA 662 consensus_9347#2 --- consensus_9347#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||