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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 999 fasta sequence
[TATATTCTCTGGATTGGACCCCTGAAAAGAATTGGATAGTCAGTGCCTCACAAGATGGAAGGCTAATTGTATGGAATGCATTAACAAGTCAAAAAACACATGCCATAAAGTTACATTGCCCATGGGTGATGACATGTGCATTTGCACCCAATGGCCAATCTGTTGCCTGTGGTGGTCTTGACAGCGCATGCTCTATCTTCAATCTTAACTCACAAGCAGACAGAGATGGGAATATACCAGTATCAAGAATACTTACCGGACACAAAGGCTATGTTTCATCCTGTCAGTATGTCCCAGATCAGGAAACCCGCCTAATTACTAGCTCTGGTGATCAAACATGTGTCCTGTGGGATGTTACTACTGGCCAAAGGATATCAATATTTGGCGGTGAATTCCCATCAGGGCATACGGCAGATGTTTTGAGCTTGTCCATAAACTCATCAAATTCGAATATGTTTGTTTCGGGTTCATGTGATGCAACTGTAAGGCTGTGGGATATCAGAATTGCAAGCCGGGCAGTTAGAACATATCATGGTCATGAGGGTGACATTAACAGTGTCAAGTTTTTCCCTGATGGCCAGAGGTTTGGTACTGGTTCAGATGATGGAACGTGTAGATTATTTGACGTGAGAACAGGGGCACC-ACTTCAAGTATACAGTCGGGAACCTGATAGAAATGATAATGAACTCCCAACTGTTACATCTATTGCATTTTCGATATCAGGAAGGCTTCTTTTTGCTGGATACTCCAATGGTGACTGGTATGTGTGGGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGANGGGCGTATAAGCTGNCTTGGTCNTTCTTCTGATGGGAGTGCATTGGGGTACAGGAAGTTGGGACAAGAAATTTGAAGATTTGGGCCNTCAGCGGACACCGGAAAATAGTTTGAAGGACAGGTTTCTTCCTGGGGTGGTGGAAGGTNCCTTGGGTTAAAAAATTCGANCAACT]
[+] EMBL CF306824 [TATATTCTCTGGATTGGACCCCTGAAAAGAATTGGATAGTCAGTGCCTCACAAGATGGAAGGCTAATTGTATGGAATGCATTAACAAGTCAAAAAACACATGCCATAAAGTTACATTGCCCATGGGTGATGACATGTGCATTTGCACCCAATGGCCAATCTGTTGCCTGTGGTGGTCTTGACAGCGCATGCTCTATCTTCAATCTTAACTCACAAGCAGACAGAGATGGGAATATACCAGTATCAAGAATACTTACCGGACACAAAGGCTATGTTTCATCCTGTCAGTATGTCCCAGATCAGGAAACCCGCCTAATTACTAGCTCTGGTGATCAAACATGTGTCCTGTGGGATGTTACTACTGGCCAAAGGATATCAATATTTGGCGGTGAATTCCCATCAGGGCATACGGCAGATGTTTTGAGCTTGTCCATAAACTCATCAAATTCGAATATGTTTGTTTCGGGTTCATGTGATGCAACTGTAAGGCTGTGGGATATCAGAATTGCAAGCCGGGCAGTTAGAACATATCATGGTCATGAGGGTGACATTAACAGTGTCAAGTTTTTCCCTGATGGCCAGAGGTTTGGTACTGGTTCAGATGATGGAACGTGTAGATTATTTGACGTGAGAACAGGGGCACC ACTTCAAGTATACAGTCG ]
[+] EMBL CA764545 [ TCTATCTTCAATCTTAACTCACAAGCAGACAGAGATGGGAATATACCAGTATCAAGAATACTTACCGGACACAAAGGCTATGTTTCATCCTGTCAGTATGTCCCAGATCAGGAAACCCGCCTAATTACTAGCTCTGGTGATCAAACATGTGTCCTGTGGGATGTTACTACTGGCCAAAGGATATCAATATTTGGCGGTGAATTCCCATCAGGGCATACGGCAGATGTTTTGAGCTTGTCCATAAACTCATCAATTTCGAATATGTTTGTTTCGGGTTCATGTGATGCAACTGTAAGGCTGTGGGATATCAGAATTGCAAGCCGGGCAGTTAGAACATATCATGGTCATGAGGGTGACATTAACAGTGTCAAGTTTTTCCCTGATGGCCAGAGGTTTGGTACTGGTTCAGATGATGGAACGTGTAGATTATTTGACGTGAGAACA GGGCACCAACTTCAAGTATACAGTCGGGAACCTGATAGAAATGATAATGAACTCCCAACTGTTACATCTATTGCATTTTCGATATCAGGAAGGCTTCTTTTTGCTGGATACTCCAATGGTGACTGGTATGTGTGGGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGANGGGCGTATAAGCTGNCTTGGTCNTTCTTCTGATGGGAGTGCATTGGGGTACAGGAAGTTGGGACAAGAAATTTGAAGATTTGGGCCNTCAGCGGACACCGGAAAATAGTTTGAAGGACAGGTTTCTTCCTGGGGTGGTGGAAGGTNCCTTGGGTTAAAAAATTCGANCAACT]
[+] EMBL AU065685 [ CAGAGATGGGAATATACCAGTATCAAGAATACTTACCGGACACAAAGGCTATGTTTCATCCTGTCAGTATGTCCCAGATCAGGAAACCCGCCTAATTACTAGCTCTGGTGATCAAACATGTGTCCTGTGGGATGTTACTACTGGCCAAAGGATATCAATATTTGGCGGTGAATTCCCATCAGGGCATACGGCAGATGTTTTGAGCTTGTCCATAAACTCATCAAATTCGAATATGTTTGTTTCGGGTTCATGTGATGCAACTGTAAGGCTGTGGGATATCAGAATTGCAAGCCGGGCAGTTAGACCATATCATGGTCATGAGGGTGACATTAACAGTGTCAAGTTTTNCCCTGATGGCCA AGGTTTGG ACTGGGTCCAATGAT ]
consensusID : consensus_9354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence
[TAGNATTATTTGNNCNTGAGAACAGGGCTCCCNNCTTCAAGTTATNCAGTCCGGGNCCCTGTTAGGAAATGATAAATGAACTCCCCAACTGTTTACCATCTATGCATTTTCGATATTCAGGAAGGCTTCTTTTTGCTGGATACTCCAATGGGTGACTGTTATGTGTGGGACACACTTCTCTCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGAGGGGCGTATAAGCTNCCTTGGTCTTTCTTCTGATGGGAGTGCATTGTGTACNAGGAAGTTGGGACAAGAATTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTTTTCTTCCTGTGTTGTTGTAAGTTCCTTGTGTTAAGAATTACGACCAACTCGATGGGCTATGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTAATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAGACGTGTGCTCTGACTCACCGTGTTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCATTCGGATCGGTCTCTTCTTGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAACTGATTATGAATTTGTCCCTTTCCAANTCAGGCAAAAAAAAAAAAA]
[+] EMBL AU030384 [TAGNATTATTTGNNCNTGAGAACAGGGCTCCCNNCTTCAAGTTATNCAGTCCGGGNCCCTGTTAGGAAATGATAAATGAACTCCCCAACTGTTTACCATCTATGCATTTTCGATATTCAGGAAGGCTTCTTTTTGCTGGATACTCCAATGGGTGACTGTTATGTGTGGGACACACTTCTCTCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGAGGGGCGTATAAGCTNCCTTGGTCTTTCTTCTGATGGGAGTGCATTGTGTACNAGGAAGTTGGGACAAGAATTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTTTTCTTCCTGTGTTGTTGTAAGTTCCTTGTGTTAAGAATTACGACCAACTCGATGGGCTATGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTAATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAGACGTGTGCTCTGACTCACCGTGTTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCATTCGGATCGGTCTCTTCTTGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAACTGATTATGAATTTGTCCCTTTCCAANTCAGGCAAAAAAAAAAAA ]
[+] EMBL AU162347 [ GAGGGGCGTATAAGCTGCCTTGGTCTTTCTTCTGATGGGAGTGCATTGTGTAC AGGAAGTTGGGACAAGAATTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTTTTCTTCCTGTGTTGTTGTAAGTTCCTTGTGTTAAGAATTACGACCAACTCGATGGGCTATGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTAATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAGACGTGTGCTCTGACTCACCGTGTTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCATTCGGATCGGTCTCTTCTTGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAACTGATTATGAATTTGTCCCTTTCCAAGTCAGGCAAAAAAAAAAAAA]
consensusID : consensus_9354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[AGGTGTGGTACTGGTTCAGATAATGGAACCGTGAGATTATTTGCCCTGAAAACAGGGCCCCAACTTCAAGTATACAGTCGGGAACCTGATAAAAATGATAATGAACTCCCCACCTGTTACATCTATTGCATTTTCGATATCAGGAAGGGTTCTTTTTGCTGGATACTCCAATGGTGACTGTTATGTGTGGGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCCTGAGGGGCGTATAAGCTGCCTTGGTCTTTCTTTTGATGGGAGTGCATTGTGTACAGGAAGTTGGGACAAGAATTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTTTTCTTCCTGTGTTGTTGTAAGTTCCCTGTGTTAAGAATTACGACCAACTCGATGGGCTATGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTAATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAAACGTGTGCTTTGACTCACCGTGTTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCCTTCGGATCGGTCTCTTCTTGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAACTGATTATGAAAAAAAAAAAAAAA]
[-] EMBL CA760045 [AGGTGTGGTACTGGTTCAGATAATGGAACCGTGAGATTATTTGCCCTGAAAACAGGGCCCCAACTTCAAGTATACAGTCGGGAACCTGATAAAAATGATAATGAACTCCCCACCTGTTACATCTATTGCATTTTCGATATCAGGAAGGGTTCTTTTTGCTGGATACTCCAATGGTGACTGTTATGTGTGGGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCCTGAGGGGCGTATAAGCTGCCTTGGTCTTTCTTTTGATGGGAGTGCATTGTGTACAGGAAGTTGGGACAAGAATTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTTTTCTTCCTGTGTTGTTGTAAGTTCCCTGTGTTAAGAATTACGACCAACTCGATGGGCTATGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTAATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAAACGTGTGCTTTGACTCACCGTGTTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCCTTCGGATCGGTCTCTTCTTGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAACTGATTATGAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 TATATTCTCTGGATTGGACCCCTGAAAAGAATTGGATAGTCAGTGCCTCACAAGATGGAA 60
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 GGCTAATTGTATGGAATGCATTAACAAGTCAAAAAACACATGCCATAAAGTTACATTGCC 120
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 CATGGGTGATGACATGTGCATTTGCACCCAATGGCCAATCTGTTGCCTGTGGTGGTCTTG 180
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 ACAGCGCATGCTCTATCTTCAATCTTAACTCACAAGCAGACAGAGATGGGAATATACCAG 240
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 TATCAAGAATACTTACCGGACACAAAGGCTATGTTTCATCCTGTCAGTATGTCCCAGATC 300
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 AGGAAACCCGCCTAATTACTAGCTCTGGTGATCAAACATGTGTCCTGTGGGATGTTACTA 360
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 CTGGCCAAAGGATATCAATATTTGGCGGTGAATTCCCATCAGGGCATACGGCAGATGTTT 420
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 TGAGCTTGTCCATAAACTCATCAAATTCGAATATGTTTGTTTCGGGTTCATGTGATGCAA 480
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 ------------------------------------------------------------
consensus_9354#0 CTGTAAGGCTGTGGGATATCAGAATTGCAAGCCGGGCAGTTAGAACATATCATGGTCATG 540
consensus_9354#1 ------------------------------------------------------------
consensus_9354#2 -----------------------------------------AGGTGTGGTACTGGTTCAG 19
consensus_9354#0 AGGGTGACATTAACAGTGTCAAGTTTTTCCCTGATGGCCAGAGGTTTGGTACTGGTTCAG 600
consensus_9354#1 ------------TAGNATTATTTGNNCNTGAGAACAGGGCTCCCNNCTTCAAGTTATNCA 48
consensus_9354#2 ATAATGGAACCGTGAGATTATTTGCCCT-GAAAACAGGGC-CCCAACTTCAAGT-ATACA 76
consensus_9354#0 ATGATGGAACGTGTAGATTATTTGACGT-GAGAACAGGGG-CACCACTTCAAGT-ATACA 657
******** ** ******* * * ******** ** **
consensus_9354#1 GTCCGGGNCCCTGTTAGGAAATGATAAATGAACTCCCCAACTGTTTACCATCTAT-GCAT 107
consensus_9354#2 GTC-GGGAACCTGATAA-AAATGATAA-TGAACTCCCCACCTGTTA--CATCTATTGCAT 131
consensus_9354#0 GTC-GGGAACCTGATAG-AAATGATAA-TGAACTCCC-AACTGTTA--CATCTATTGCAT 711
*** *** **** ** ********* ********* * ***** ******* ****
consensus_9354#1 TTTCGATATTCAGGAAGGCTTCTTTTTGCTGGATACTCCAATGGGTGACTGTTATGTGTG 167
consensus_9354#2 TTTCGATAT-CAGGAAGGGTTCTTTTTGCTGGATACTCCAATGG-TGACTGTTATGTGTG 189
consensus_9354#0 TTTCGATAT-CAGGAAGGCTTCTTTTTGCTGGATACTCCAATGG-TGACTGGTATGTGTG 769
********* ******** ************************* ****** ********
consensus_9354#1 GGACACACTTCTCTCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGAGGG 227
consensus_9354#2 GGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCCTGAGGG 249
consensus_9354#0 GGACACACTTCTCGCTGAGGTGGTACTTAATTTGGGAAACCTCCAAAACTCTCATGANGG 829
************* *************************************** *** **
consensus_9354#1 GCGTATAAGCTNCCTTGGTCTTTCTTCTGATGGGAGTGCATTGTGTACNAGGAAGTTGGG 287
consensus_9354#2 GCGTATAAGCTGCCTTGGTCTTTCTTTTGATGGGAGTGCATTGTGTACA-GGAAGTTGGG 308
consensus_9354#0 GCGTATAAGCTGNCTTGGTCNTTCTTCTGATGGGAGTGCATTGGGGTACAGGAAGTTGGG 889
*********** ******* ***** **************** * **********
consensus_9354#1 ACAAGAA-TTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTT 346
consensus_9354#2 ACAAGAA-TTTGAAGATTTGGGCCTTCAGCGGACACCGGAAAATAGTTTGAAGGACAGTT 367
consensus_9354#0 ACAAGAAATTTGAAGATTTGGGCCNTCAGCGGACACCGGAAAATAGTTTGAAGGACAGGT 949
******* **************** ********************************* *
consensus_9354#1 TTCTTCCTGTGTTGTTGTAAG-TTCCTTGTGTTAAGAATTACGACCAACTCGATGGGCTA 405
consensus_9354#2 TTCTTCCTGTGTTGTTGTAAG-TTCCCTGTGTTAAGAATTACGACCAACTCGATGGGCTA 426
consensus_9354#0 TTCTTCCTGGGGTGGTGGAAGGTNCCTTGGGTTAAAAAATTCGANCAACT---------- 999
********* * ** ** *** * ** ** ***** ** * *** *****
consensus_9354#1 TGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTA 465
consensus_9354#2 TGGAAATCAGTTTGTTGGTCTTGTAGCATAGAATCAGGCAATCAGCTGTATCATATCCTA 486
consensus_9354#0 ------------------------------------------------------------
consensus_9354#1 ATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAGACGTGTGCTCTGACTCACCGTG 525
consensus_9354#2 ATGTCCAGTGGAAAAATGCAATCTGTTGTCTTGGCAAAACGTGTGCTTTGACTCACCGTG 546
consensus_9354#0 ------------------------------------------------------------
consensus_9354#1 TTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCATTCGGATCGGTCTCTTCT 585
consensus_9354#2 TTAAGTTGATGTAGTGTTTATATTACCAGAAAGCATCATCCCTTCGGATCGGTCTCTTCT 606
consensus_9354#0 ------------------------------------------------------------
consensus_9354#1 TGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAAC 645
consensus_9354#2 TGTTGTATAACTTCTTTTTGTAGTAGAAAGCTACCAACTTTTGCATTTGTATTTCACAAC 666
consensus_9354#0 ------------------------------------------------------------
consensus_9354#1 TGATTATGAATTTGTCCCTTTCCAANTCAGGCAAAAAAAAAAAAA 690
consensus_9354#2 TGATTATGAA----------------------AAAAAAAAAAAAA 689
consensus_9354#0 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||