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Oryza sativa
cluster # 9370 cluster # 9370       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9370#0 length = 702 sequences # 2  
consensus_9370#1 length = 436 sequences # 2  
consensus_9370#2 length = 338 sequences # 1  
consensus_9370#3 length = 300 sequences # 1  

consensusID : consensus_9370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 702
fasta sequence
                              [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA]

[+] EMBL AU068826             [GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCTGCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTGGAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACATCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCT                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU082308             [                                                                                                                                                                                                                                                                                                    GAACGCGTGGNTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACAGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGAGGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA]


>consensus_9370#0 GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCT GCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTG GAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACA TCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGG CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT GGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGA AGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTACA GCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACC TCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCGTCCGCGCTCGCCAGGA GGCNATGGCGCAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACAAGTG ATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTG GTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA



consensusID : consensus_9370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 436
fasta sequence
                              [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT-CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC-TGCCTCCAGA-TGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT]

[+] EMBL AU095288             [ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANT CGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGC TGCCTCCAGA TGNCCGCCGTCTC                                                                                                            ]
[+] EMBL C72106               [                                              CGGACGTGGCGGCGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGGCTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGCCCCGACGACTTCGCGCANTCCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTTGCCTCCAGATTGCCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAGGCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAACGATTCTCTTTCAATT]


>consensus_9370#1 ACAAGGGAAACCCTCGCCGACGGACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGGCG GCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGTGG CTGTTCGTCCGCTCCGACGAGATCCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAGAAG GAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTACAGC CCCGACGACTTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCG TCGGCTGCCTCCAGATGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAAGGAG GCATTGGCGACGGCCGGCCCGCCGACGAGCCGGTTCAAAGGCAACGGGGGANAATNTTAA CGATTCTCTTTCAATT



consensusID : consensus_9370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence
                              [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070978             [ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCGCACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9370#2 ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTACCTCGTCGGCTG CCTCCAGATNCCCGCCGTCNCCNTCCTCGCCGCGCNCCGCCTCGCCAGGNGGCCATNGCG CACGCCGCCCNCCGACNAGCCGGCTCCAACNCCACCGGGGAACAAGTGATCACCGCATCT CTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATAAA AACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTG CAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_9370#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence
                              [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031192             [GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCCGCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9370#3 GTCCTACCNGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGTCCTCTGCCNTCC GCGTTCGCCAGGAGGCCATGGCGCAGCCGCCGCCCGCCNACGAGCCGGNTCCAACGCCNC CGGCGGACAAGTGATCACCGCATCTCTCTTCNCATTTTTTTTTCTCCTGCAAATTTGTGT TGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTTGCTTGAATATGATGTATCATCT TCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GAAACCCTCGCCGCCGCCGCCGTCGGGGATGACGTCCGTGCGCGCCGTGGGGTCCACGCT 60
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GCCGTCGATCCGCGCGGCGGCGGACTGGCCCGGCAGGAGCTGCTGCGGCGGGAGCTGGTG 120
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      GAGTGCCAGCTGGTGGCGGGCATCTGGTGCCACGGGTTCACGGTGTCGCAGCTGCGGACA 180
consensus_9370#1      ------------------------------------------------------------
                                                                                  

consensus_9370#2      ------------------------------------------------------------
consensus_9370#3      ------------------------------------------------------------
consensus_9370#0      TCCGCGCCAGCCTGCCGCCGACGGCGAGGCTGGTTGTGGCGAAGAACTCGGACGTGGCGG 240
consensus_9370#1      -ACAAGGGAAACCCTCGCCGACGG-ACNTNGNGTTGTGGCGAAGAACTCGGACGTGGCGG 58
                                                                                  

consensus_9370#2      ----------------ACNTCGCGCANTCGAGTCCATNCCCACCAGGGTCCAGTCCTACC 44
consensus_9370#3      ----------------------------------------------------GTCCTACC 8
consensus_9370#0      CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 300
consensus_9370#1      CGGCGGTGGCCGGGACGCGGTGGGAGGCGGTGCGGCCGTTCGCGCGGGGGATGAACGCGT 118
                                                                          *  *    

consensus_9370#2      AGTACCTCGTCGGCTGCCTCCAGATNCCCGCCGTCNCCNT--CCTCGCCGCGCNCCGC-C 101
consensus_9370#3      NGTACCTCGTNGGCTGCCTCCAGATGCCCGCCGTNTCCGT--CCTC--TGCCNTCCGCGT 64
consensus_9370#0      GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 359
consensus_9370#1      GGCTGTTCGTCCGCTCCGACGAGAT-CCCGCCGGCGCTGCGGCCGTACCGCGACTTCCAG 177
                       *    ****  *** *  * **** *******   *     **     **      *  

consensus_9370#2      TCGCCA-GGNGGCCATNGCGCA----------CGCCGCCCNCCGACNAGCCGGCTCCAAC 150
consensus_9370#3      TCGCCA-GGAGGCCATGGCGCAGC--------CGCCGCCCGCCNACGAGCCGGNTCCAAC 115
consensus_9370#0      AAGGAGTGGAAGCTGCAGCTCAACGACTTNACTGGCGCCGTCTTCGAGGGCCGCCTNTAC 419
consensus_9370#1      AAGGAGTGGAAGCTGCAGCTCAACGACTTCACTGGCGCCGTCTTCGAGGGCCGCCTCTAC 237
                        *    **  **    ** **           * ****  *      * * *     **

consensus_9370#2      NCCACCGGGGAACAAGTGATCACCGCATCTCTCTTCTC--ATTTTTTTTTCTCCTGCAAA 208
consensus_9370#3      GCCNCCGGCGGACAAGTGATCACCGCATCTCTCTTCNC--ATTTTTTTTTCTCCTGCAAA 173
consensus_9370#0      AGCCCCGACGACTTCGCGCAGCTCGAGTCCATGCCCACCAGGGTCCAGTCCTACCAGTAC 479
consensus_9370#1      AGCCCCGACGACTTCGCGCAN-TCGAGTCCATNCCCACCAGGGTCCAGTCCTACCAGTAC 296
                        * ***  *     * *     **  **  *   * *     *    * ** *    * 

consensus_9370#2      TTTGT--GTTGCAGAAACATTGGTAGCCCATAAAAACGCATTGCGTT---GCTTGAATA- 262
consensus_9370#3      TTTGT--GTTGCAGAAACATTGGTAGCCCATNAAAACGCATTGCGTT---GCTTGAATA- 227
consensus_9370#0      CTCGTCGGCTGCCTCCAGATGCCCGCCGTCTCCGTCCTCAGNNCG-TCCGCGCTCGCCA- 537
consensus_9370#1      CTCGTCGGCTGCCTCCAGATGNCCGCCGTCTCCGTCCTCGCCGCGCTCCGGCTTCGCCAA 356
                       * **  * ***    * **      *   *     * *    ** *      *    * 

consensus_9370#2      TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAACAAAAAAAAAAAAAAAAA 322
consensus_9370#3      TGATGTATCATCTTCCAATATTACATGTTGATGTTTTGCAAAAAAAAAAAAAAAAAAAAA 287
consensus_9370#0      GGAGGCNATGGCG-CAGCCGCCGCCCGCCGACGAGCCGGCTCCAACGCCACCGGCGGACA 596
consensus_9370#1      GGAGGCATTGGCGACGGCCG--GCCCGCCGACGAGCCGGTTCAAAGGCAAC-GGGGGANA 413
                       ** *      *  *        *  *  ** *    *     **    *       * *

consensus_9370#2      AAAAAAAAAAAAAAAA-------------------------------------------- 338
consensus_9370#3      AAAAAAAAAAAAA----------------------------------------------- 300
consensus_9370#0      AGTGATCACCGNATCTCTCTTCTCATTTTTTTTTCTCCTGCAAATTTGTGTTGCAGAAAC 656
consensus_9370#1      AT--NTTAACGA--TTCTCTTTCAATT--------------------------------- 436
                      *      *                                                    

consensus_9370#2      ----------------------------------------------
consensus_9370#3      ----------------------------------------------
consensus_9370#0      ATTGGTAGCCNATAAAAACGCATTGCGTTGCTTGAAAAAAAAAAAA 702
consensus_9370#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)