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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1615 fasta sequence
[TTTTTTTTTTTTTTGAAACGAAAACACGTATGCATTGCGCGGNAAACTTGTTTAACTACAGAGACATTGCGATGTANACATGTACTACGTGACGGTGAGATGGATACAGGATTTCGACACAAATTCAGACATAGAAGCAGACACCGATTCAAACTTGGAATCGATTCAGTGGCTATCGACGAAGCTCTTGACGGCGTCGACGAGCTCCCGCGCCCGCGCCGCCGCGACGGGGTGGGACTCCACGGCGAACCAGTTGAGGTAGAACACGTGGCCGATCCCGCGGCCGTGGCTGACCACCGTTTCCACTGCCTTGCCCGCGCGCGCCATGGCCTCGCCGTACTCCACCTGCGCGTCGCGGAGCATGTCCTCCTCCGCGACCATCACCAGCATCGGCGGCAGCTGGGCTCCCTCCGCCGCCGTCACCGCCGCCGCCGGAGACGTGTACGGGTGGTCCCTGCTGGTGGTTCCCACCGGCAACGCGAGCATGACGAACTTGTCCACCGTCTCCTGCGTCATGAACGGCGTGGGAGGGTTCTCCAGCTCCGACGGGCTCTTCTCCGGCAAGATGAAGCCCGGGTGGAGGAGGACACCGCCGGCGAGGCGTATCGGGTCGAGAGCCTCGGCCCCAGCCTCGCCGGCGCGTGCCGCCACGTTGTGCACGAGGACGCCGCCCGCGCTGTCGCCGATGAGGAACACGCGGGAGAAGTCGGCGGCGTCGCGAAGGCGTTCGACCGCATGGTGCGCGATGGTGTCGCTGGTGCCGCACGCGACGTCACGGAGCCAGAGCAGCGCGGCGTGTCCGGCGTCGATGGCGGCGGGGAGGCGGTGCTCCGGCGCGAGCGGGAGGACGACGGAGACGATGCCCGCGACGTCGAGCTCCACGGCGAGGCGGGCGTAGAAGCGGTGGTAGAGCGACCACGCGGCGTGGGACAAGCAGAAGCCGCCGCCGTGGAAATGGACGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACGCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCCAGATGATCGAGTACGTAGCAGTGAAAATGTGAAATGAACTGGCTATGCTGCGTTTGTGTTTTATAGACGCAGCACGGATTCACGGCGAGCATGGATGACATGGCCTTGCAAACTCTGCGCGCATACGTACGTCGTGTGGACGCGCTGGCTTGACGCCATCGTTGATTGGCTCAAGTCGTCTTTAATTTGTTGTAGTATGTTAATTTGAGTCTTTCACTTAGTCTTGGTGAGTCGTTTCGTCTCGGTCTAGCTTTAATAAAGCTCGATCGACAGAAAATGGTGGCCTTCTTCGCACCTAACACTTCCGATAAAATGGTGTGTCCTATCAAATCTCTCTGGAATGGAGGATTACT]
[-] EMBL AU173319 [TTTTTTTTTTTTTTGAAACGAAAACACGTATGCATTGCGCGGNAAACTTGTTTAACTACAGAGACATTGCGATGTANACATGTACTACGTGACGGTGAGATGGATACAGGATTTCGACACAAATTCAGACATAGAAGCAGACACCGATTCAAACTTGGAATCGATTCAGNGGCTATCGACNAAGCTNTTGACGGCGTCGACGAGCTCCCGCGCCCGCGCCGCCGNGACGGGGTGGGACTCCACGGCGAACCAGTTGAGGTANAACACGTGGCCGATCCCGCGGCCGTGGCTGACCACCGTTTCCACTGCCTTGCCCGCGCGCGCCATGGCCTCGCCGTACTCCACCTGCGCGTCGNGGAGCATGTCCTCCTCCGCGACCATCACCAGCATCGGCGGCAGCTGGGCTCCCTCCGCCGCCGT ACCGCCGCCG ]
[-] EMBL AK061124 [ CACGTATGCATTGCGCGGGAAACTTGTTTAACTACAGAGACATTGCGATGTAGACATGTACTACGTGACGGTGAGATGGATACAGGATTTCGACACAAATTCAGACATAGAAGCAGACACCGATTCAAACTTGGAATCGATTCAGTGGCTATCGACGAAGCTCTTGACGGCGTCGACGAGCTCCCGCGCCCGCGCCGCCGCGACGGGGTGGGACTCCACGGCGAACCAGTTGAGGTAGAACACGTGGCCGATCCCGCGGCCGTGGCTGACCACCGTTTCCACTGCCTTGCCCGCGCGCGCCATGGCCTCGCCGTACTCCACCTGCGCGTCGCGGAGCATGTCCTCCTCCGCGACCATCACCAGCATCGGCGGCAGCTGGGCTCCCTCCGCCGCCGTCACCGCCGCCGCCGGAGACGTGTACGGGTGGTCCCTGCTGGTGGTTCCCACCGGCAACGCGAGCATGACGAACTTGTCCACCGTCTCCTGCGTCATGAACGGCGTGGGAGGGTTCTCCAGCTCCGACGGGCTCTTCTCCGGCAAGATGAAGCCCGGGTGGAGGAGGACACCGCCGGCGAGGCGTATCGGGTCGAGAGCCTCGGCCCCAGCCTCGCCGGCGCGTGCCGCCACGTTGTGCACGAGGACGCCGCCCGCGCTGTCGCCGATGAGGAACACGCGGGAGAAGTCGGCGGCGTCGCGAAGGCGTTCGACCGCATGGTGCGCGATGGTGTCGCTGGTGCCGCACGCGACGTCACGGAGCCAGAGCAGCGCGGCGTGTCCGGCGTCGATGGCGGCGGGGAGGCGGTGCTCCGGCGCGAGCGGGAGGACGACGGAGACGATGCCCGCGACGTCGAGCTCCACGGCGAGGCGGGCGTAGAAGCGGTGGTAGAGCGACCACGCGGCGTGGGACAAGCAGAAGCCGCCGCCGTGGAAATGGACGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACGCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCCAGATGATCGAGTACGTAGCAG ]
[+] EMBL AK101030 [ AGTGGCTATCGACGAAGCTCTTGACGGCGTCGACGAGCTCCCGCGCCCGCGCCGCCGCGACGGGGTGGGACTCCACGGCGAACCAGTTGAGGTAGAACACGTGGCCGATCCCGCGGCCGTGGCTGACCACCGTTTCCACTGCCTTGCCCGCGCGCGCCATGGCCTCGCCGTACTCCACCTGCGCGTCGCGGAGCATGTCCTCCTCCGCGACCATCACCAGCATCGGCGGCAGCTGGGCTCCCTCCGCCGCCGTCACCGCCGCCGCCGGAGACGTGTACGGGTGGTCCCTGCTGGTGGTTCCCACCGGCAACGCGAGCATGACGAACTTGTCCACCGTCTCCTGCGTCATGAACGGCGTGGGAGGGTTCTCCAGCTCCGACGGGCTCTTCTCCGGCAAGATGAAGCCCGGGTGGAGGAGGACACCGCCGGCGAGGCGTATCGGGTCGAGAGCCTCGGCCCCAGCCTCGCCGGCGCGTGCCGCCACGTTGTGCACGAGGACGCCGCCCGCGCTGTCGCCGATGAGGAACACGCGGGAGAAGTCGGCGGCGTCGCGAAGGCGTTCGACCGCATGGTGCGCGATGGTGTCGCTGGTGCCGCACGCGACGTCACGGAGCCAGAGCAGCGCGGCGTGTCCGGCGTCGATGGCGGCGGGGAGGCGGTGCTCCGGCGCGAGCGGGAGGACGACGGAGACGATGCCCGCGACGTCGAGCTCCACGGCGAGGCGGGCGTAGAAGCGGTGGTAGAGCGACCACGCGGCGTGGGACAAGCAGAAGCCGCCGCCGTGGAAATGGACGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACGCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCCAGATGATCGAGTACGTAGCAGTGAAAATGTGAAATGAACTGGCTATGCTGCGTTTGTGTTTTATAGACGCAGCACGGATTCACGGCGAGCATGGATGACATGGCCTTGCAAACTCTGCGCGCATACGTACGTCGTGTGGACGCGCTGGCTTGACGCCATCGTTGATTGGCTCAAGTCGTCTTTAATTTGTTGTAGTATGTTAATTTGAGTCTTTCACTTAGTCTTGGTGAGTCGTTTCGTCTCGGTCTAGCTTTAATAAAGCTCGATCGACAGAAAATGGTGGCCTTCTTCGCACCTAACACTTCCGATAAAATGGTGTGTCCTATCAAATCTCTCTGGAATGGAGGATTACT]
consensusID : consensus_9383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence
[GCCGGGGGACGCCCGCGGCCTGTGCGCCGGGGGGGACCCCCGGGAGAATTCGGCGGCATCGGGAAGGCGTCGACCCCCGGGGGCGCGAGGGGTTCGTGGGGCCGCCCCGGACGTCCCGGAACCAGAACAACCCCGGCGTTTCCGCCGTCGACGGCGGCGGGGGAGGCGGTTTTCCGGCGCGAGCGGGAGGCCGACGGGAGACGATGCCCGCGACGTCGAGCTTCACGCCGAGGCGGGGGTAGAAGCGGTGGTAGAGCGACCACGCGGCGGGGACAAGCAGAAGCCGCCGCCGTGGAAATGGGCGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACGCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCC]
[-] EMBL CA755720 [GCCGGGGGACGCCCGCGGCCTGTGCGCCGGGGGGGACCCCCGGGAGAATTCGGCGGCATCGGGAAGGCGTCGACCCCCGGGGGCGCGAGGGGTTCGTGGGGCCGCCCCGGACGTCCCGGAACCAGAACAACCCCGGCGTTTCCGCCGTCGACGGCGGCGGGGGAGGCGGTTTTCCGGCGCGAGCGGGAGGCCGACGGGAGACGATGCCCGCGACGTCGAGCTTCACGCCGAGGCGGGGGTAGAAGCGGTGGTAGAGCGACCACGCGGCGGGGACAAGCAGAAGCCGCCGCCGTGGAAATGGGCGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACGCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCC]
[-] EMBL OSR21522A [ CCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGACACCATGGTCCGTGNCGACGTNGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGAGTAGACGCGGANCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGCC]
[-] EMBL AU032100 [ CGTCGTCAGGTACAGNCGGACGTCGACGCCATGGTCCGTGGCNACNTCGTGTACGGTGACCCCGTCCCGTNGGTCGTCGTACGNCGGGACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGTCGGTCGACGGAGCCGTCGGAGTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTTAGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGCTGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9383#0 TTTTTTTTTTTTTTGAAACGAAAACACGTATGCATTGCGCGGNAAACTTGTTTAACTACA 60
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 GAGACATTGCGATGTANACATGTACTACGTGACGGTGAGATGGATACAGGATTTCGACAC 120
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 AAATTCAGACATAGAAGCAGACACCGATTCAAACTTGGAATCGATTCAGTGGCTATCGAC 180
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 GAAGCTCTTGACGGCGTCGACGAGCTCCCGCGCCCGCGCCGCCGCGACGGGGTGGGACTC 240
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 CACGGCGAACCAGTTGAGGTAGAACACGTGGCCGATCCCGCGGCCGTGGCTGACCACCGT 300
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 TTCCACTGCCTTGCCCGCGCGCGCCATGGCCTCGCCGTACTCCACCTGCGCGTCGCGGAG 360
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 CATGTCCTCCTCCGCGACCATCACCAGCATCGGCGGCAGCTGGGCTCCCTCCGCCGCCGT 420
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 CACCGCCGCCGCCGGAGACGTGTACGGGTGGTCCCTGCTGGTGGTTCCCACCGGCAACGC 480
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 GAGCATGACGAACTTGTCCACCGTCTCCTGCGTCATGAACGGCGTGGGAGGGTTCTCCAG 540
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 CTCCGACGGGCTCTTCTCCGGCAAGATGAAGCCCGGGTGGAGGAGGACACCGCCGGCGAG 600
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 GCGTATCGGGTCGAGAGCCTCGGCCCCAGCCTCGCCGGCGCGTGCCGCCACGTTGTGCAC 660
consensus_9383#1 --------------------------------------------------------GCCG 4
**
consensus_9383#0 GAGGACGCCGCCCGCGCTGTCGCCGATGAGGAACACGCGGGAGAAGTCGGCGGCGTCGCG 720
consensus_9383#1 GGGGACGCCCGCGGCCTGTGCGCCGG-GGGGGACCCCCGGGAGAATTCGGCGGCATCGGG 63
* ******* * ** ***** * ** ** * ******** ******** *** *
consensus_9383#0 AAGGCGTTCGACCGCATGGTGCGCGATGGTGTCGCTGGTGCCGCACGCGACGTCACGGAG 780
consensus_9383#1 AAGGCGT-CGACCCCCGGGGGCGCGAGGGGTTCG-TGGGGCCGCCCCGGACGTCCCGGAA 121
******* ***** * ** ****** ** *** *** ***** * ****** ****
consensus_9383#0 CCAGAGCAGCGC-GGCGTGTCCGGCGTCGATGGCGGCGGGG-AGGCGGTGCTCCGGCGCG 838
consensus_9383#1 CCAGAACAACCCCGGCGTTTCCGCCGTCGACGGCGGCGGGGGAGGCGGTTTTCCGGCGCG 181
***** ** * * ***** **** ****** ********** ******* *********
consensus_9383#0 AGCGGGAGGACGACGG-AGACGATGCCCGCGACGTCGAGCTCCACGGCGAGGCGGGCGTA 897
consensus_9383#1 AGCGGGAGGCCGACGGGAGACGATGCCCGCGACGTCGAGCTTCACGCCGAGGCGGGGGTA 241
********* ****** ************************ **** ********* ***
consensus_9383#0 GAAGCGGTGGTAGAGCGACCACGCGGCGTGGGACAAGCAGAAGCCGCCGCCGTGGAAATG 957
consensus_9383#1 GAAGCGGTGGTAGAGCGACCACGCGGCG-GGGACAAGCAGAAGCCGCCGCCGTGGAAATG 300
**************************** *******************************
consensus_9383#0 GACGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGAC 1017
consensus_9383#1 GGCGAGAACAGGGCGGCGCCCGGCCGGCGTCGTCGTCGTCAGGTACAGGCGGACGTCGAC 360
* **********************************************************
consensus_9383#0 GCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGG 1077
consensus_9383#1 GCCATGGTCCGTGGCGACGTCGTGGACGGTGACCCCGTCCCGTGGGTCGTCGTACGGCGG 420
************************************************************
consensus_9383#0 GACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGA 1137
consensus_9383#1 GACGAGGACCATGAACGCGGCGGCTTCCGGCGGGCCGAGGCGGTCGACGGAGCCGTCGGA 480
************************************************************
consensus_9383#0 GTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTT 1197
consensus_9383#1 GTAGACGCGGATCCAGTTGGTGACGGACTCGACCAGCGTCCTGGTCGTCGTGGTCGGGTT 540
************************************************************
consensus_9383#0 AGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGC 1257
consensus_9383#1 AGCCGCCTCTTGACGCTCCTTGGTCGCGGCCATTTGTGGCAATGTTGCCATGGCAGCAGC 600
************************************************************
consensus_9383#0 TGGCCAGATGATCGAGTACGTAGCAGTGAAAATGTGAAATGAACTGGCTATGCTGCGTTT 1317
consensus_9383#1 TGGCC------------------------------------------------------- 605
*****
consensus_9383#0 GTGTTTTATAGACGCAGCACGGATTCACGGCGAGCATGGATGACATGGCCTTGCAAACTC 1377
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 TGCGCGCATACGTACGTCGTGTGGACGCGCTGGCTTGACGCCATCGTTGATTGGCTCAAG 1437
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 TCGTCTTTAATTTGTTGTAGTATGTTAATTTGAGTCTTTCACTTAGTCTTGGTGAGTCGT 1497
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 TTCGTCTCGGTCTAGCTTTAATAAAGCTCGATCGACAGAAAATGGTGGCCTTCTTCGCAC 1557
consensus_9383#1 ------------------------------------------------------------
consensus_9383#0 CTAACACTTCCGATAAAATGGTGTGTCCTATCAAATCTCTCTGGAATGGAGGATTACT 1615
consensus_9383#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||