These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence [CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCGCAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGTCCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTTCCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGGCAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGCAGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGCTGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCCGCCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAAAATTAAAAAA] [+] EMBL AK108881 [CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCGCAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGTCCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTTCCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGGCAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGCAGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGCTGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCCGCCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGT ] [+] EMBL AU166953 [ CCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTACAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTCTCGTAGCTCAAGATCAGAAGCGTTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTTGAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAGCCGAAAATTAAAAAA] consensusID : consensus_9385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 320 fasta sequence [ATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC-GATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGGAGGCTGGCGCGCACCG-GTCGACCGTTGTGATGGAGAGGCT-CCGGTNCGTCGCCAACTTCNCCTTCC] [+] EMBL AU032226 [ATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC GATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGGAGGCTGGCGCGCACCG GTCGACCGTTGTGATGGAGAGGCT CCGGTNCGTCGCCA ] [+] EMBL CA758460 [ CATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATC GACCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCG ] [+] EMBL AU166952 [ TCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCAGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCG GCGGAGGCTGGCGCGCACCGCGTCGACCGTTGTGATGGAGAGGCTCCCGGTCCGTNGCCAACTTCNCCTTCC] consensusID : consensus_9385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [GCCGGCACGGTANCCAGCCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTNCAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTNTNGTAGCTCAAAAAAAAAAAAAAA] [+] EMBL AU184743 [GCCGGCACGGTANCCAGCCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCCTTGTCGCGTGGTTTCGCTTGGTTAGATAGGGGATTTGTTTGTTCATTGTGACGGATCAACGCTNCAACACACAACAATTTTGGATTGTTTACTTATACTTGTAGTACATACTACTACAAAATTTGTGATTCAAATATGATTCAAATGCTGGGACATGTNTNGTAGCTCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9385#0 CCCATCTCATCTCATCATCGCCTTTCCTCCGATTCGATTCACCGGTCGAACAGATCGAGC 60 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 TCACTCAGCTGTGAGGTGAGTTTCTTGGATTGGATCATCGATCGTCGTCGTCGTCTATGG 120 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CGGTGGTGCAGATGCTGTCGTGGCTCAGCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACG 180 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 TCATCGTCGGCGCCATCGCCGTCGTGTCGTGGCTGGGGCAGGGCGTGGGCGGGACGACCT 240 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CGACGCCGTCGTCGGCGGCGCGGCGGAGGCTGGCGCCACGGAGCTCGCCTGTGGCCGCCG 300 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CAACAGCGGCGGCGATCAAGAACGAGGAAGAAGAGGCGGAAGCAGAGGAGGAGGAGGAGT 360 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CCATCAGCTTGGACGAGGCGTACGCGCTGGCCCAGCAGGCGCAGGCGCGCTCGCCGCGTT 420 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CCGCACCAGATGCCGCGGCGGCGGCGAAGGCGGCGGACGCCAAGCCGCGGCGGGCGCGGG 480 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 CAGAGGAGGTAGAGGAAGGGAAGGCGGAGGTGAACGCGCGGGCCGAGCGGTTCATCAAGC 540 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 AGTTCAGGGAGGACCTCAAGCTGCAGCGCATCAACTCCATCATCAACTACACCAACGCGC 600 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 ------------------------------------------------------------ consensus_9385#0 TGCGCCGCCGCGGCGCCGGCGGCGTCGCGGCGACCGCGCCGGCGCCGGCACGGTAGCC-G 659 consensus_9385#2 -------------------------------------------GCCGGCACGGTANCCAG 17 consensus_9385#1 ----------------------------------------------ATCATCGCCTTTCC 14 ** * consensus_9385#0 CCCGCGTTTCGCTGCCGCTCCGATCCACTCTACACGATCC-TTGTCGCGTGGTTTCGCTT 718 consensus_9385#2 CCCGCGTTTNGCTGCCGCTCCGATCCACTNTACACGATCC-TTGTCGCGTGGTTTCGCTT 76 consensus_9385#1 TCCGATTCGATTCACCGGTCGAACAGATCGAGCTCACTCAGCTGTGAGGTGAGTTTCTTG 74 *** * *** ** * * * * ** *** *** ** * consensus_9385#0 GGTTAGATAGGGGAT--TTGT--TTGTTCATTGTGACGGATCA-ACGCTA--------CA 765 consensus_9385#2 GGTTAGATAGGGGAT--TTGT--TTGTTCATTGTGACGGATCA-ACGCTN--------CA 123 consensus_9385#1 GATTGGATCATCGATCGTCGTCGTCGTCTATGGCGGTGGTGCAGATGCTGTCGTGGCTCA 134 * ** *** *** * ** * ** ** * * ** ** * *** ** consensus_9385#0 ACACACAACAATTTTGGATTGTTTACTTATAC-TTGTAGTACATACTACTACAA--AATT 822 consensus_9385#2 ACACACAACAATTTTGGATTGTTTACTTATAC-TTGTAGTACATACTACTACAA--AATT 180 consensus_9385#1 GCTCCGGGGCGGCGTGGTTCGTGTTCCTGAACGTCATCGTCGGCGCCATCGCCGTCGTGT 194 * * *** * ** * * * ** * * ** * * * * consensus_9385#0 TGTGATTCAAATATGATTCAAATGCTGGGACAT--GTCTCGTAGCTCAAGATCAGAAGCG 880 consensus_9385#2 TGTGATTCAAATATGATTCAAATGCTGGGACAT--GTNTNGTAGCTCAAAAAAAAAAAAA 238 consensus_9385#1 CGTGGCTGGGGCAGGGCGTGGGCGGGACGACCTCGACGCCGTCGTCGGCGGCGCGNGCGG 254 *** * * * * *** * ** * consensus_9385#0 TTTGGTGACTCAGTTTGCGATCCATCCGAAGGATTTTCGATCTTGGATCTAGGCTCTGTT 940 consensus_9385#2 AA---------------------------------------------------------- 240 consensus_9385#1 AGGCTGGCGCGCACCGGTCGACCGTTGTGATGGAGAGGCTCCGGTNCGTCGCCAACTTCN 314 consensus_9385#0 GAGCTGCTTTTATTATTTGTGATTGCAAGATCGAATGAATAGAAGATGGCGTCGATCGAG 1000 consensus_9385#2 ------------------------------------------------------------ consensus_9385#1 CCTTCC------------------------------------------------------ 320 consensus_9385#0 CCGAAAATTAAAAAA 1015 consensus_9385#2 --------------- consensus_9385#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||