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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1618 fasta sequence
[AAGAAAGTAGCAAGCCGGAGTCGAGAGCCTCTCAACCCATCGGCCATCGCCCACCACCGCCATTCGCCACCACCTCGCCTCCGATTCAGATCTCCCTCCCCCCCTTCCATTCCACGCCCATCGGATTCCCTCCCGATTCCGCTCCATTCCTCCCCGCCTCCGCCCCCATCTCCGCCGACCTCGTCGTCGTCGGCGTCCTCATCCAGGCAGTCTCGGCGGCGATTCGATCGCCGCCACGGTCGCCGATGGAGGCCATCCGGAAGCAGGCGTCCAAGCTCCGGGAGCAGGTCGCCCGGCAGCAGCAGGCCGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCGGACGGCGCGTTCGCCGACGAGGCCGAGGCGCAGCAGCACTCCAAGCTCGAGAAGCTCTACATCTCCACGCGCGCCGCTAAGCACTTCCAAAGGGACATAGTTCGCGGGGTGGAGGGATACATTGTCACAGGGTCGAAGCAGGTCGAAATCGGTAATAAGTTATGCGAGGATGGCAAGAAGTATGGAGCGGAGAACACTTGCACCAGCGGAAGCACGCTGTCGAAGGCGGCGTTGTGTTTCGCCAAAGCACGCTCACTGATGGAGAAGGAGAGAGGGAACCTGCTGGAAGCACTGGGTACTCAGGTGGCAGAACCGTTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACAGGATGCGTCAGGAAGCCGAAGCACAGGCTATTGAAGTCTCGAAGCGCCAAATGAAATTAAGAGAAACATCTGGGAATGGTGATATGATTTCAAGATTAGAGGCTGCTGAATCAAAGTTGCAAGAGTTAAAGTCAAACATGGGGGTTCTAGGCAAGGAAGCCGTTGCATCAATGACTGCTGTTGAAGCTCAACAGCAAAGACTGACCTTGCAACGACTAATTGCAATGGTCGAATCTGAGAGAAGTTATCACCAGAGGGTTCTGCAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGAGCGCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGTTGAGAGTTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCCAACAGTCGC-TGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGGCCATCCAGTCTTATCGTGCTGAGAGTGAAACTGAGCTCAACCTGGCAGCTGGTGACTATATAGTTGTCCGGAAGGTGTCAAACAATGGATGGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGGTTCCCTTACGACTACATCGAGAAAAGGGACCGTGTGCTTG-CAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGCCATACATACATAACCCTGGTGTTGTACACTGTATTATGATCGTTCGTGATCTTCAAAGACCCTCTGATCAGAGAAATCACAAATATTCTTTTGTTCTATTATTGTCATTATCACTACCCCTTTTGTCAAAACCAGTGCAGCCTTTTGTATGACATCTTGTTGCATGGCTAGCTTTCTGAATATTTCAAAATATACAGCGGAGAGGACACTGTTCATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK067223 [AAGAAAGTAGCAAGCCGGAGTCGAGAGCCTCTCAACCCATCGGCCATCGCCCACCACCGCCATTCGCCACCACCTCGCCTCCGATTCAGATCTCCCTCCCCCCCTTCCATTCCACGCCCATCGGATTCCCTCCCGATTCCGCTCCATTCCTCCCCGCCTCCGCCCCCATCTCCGCCGACCTCGTCGTCGTCGGCGTCCTCATCCAGGCAGTCTCGGCGGCGATTCGATCGCCGCCACGGTCGCCGATGGAGGCCATCCGGAAGCAGGCGTCCAAGCTCCGGGAGCAGGTCGCCCGGCAGCAGCAGGCCGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCGGACGGCGCGTTCGCCGACGAGGCCGAGGCGCAGCAGCACTCCAAGCTCGAGAAGCTCTACATCTCCACGCGCGCCGCTAAGCACTTCCAAAGGGACATAGTTCGCGGGGTGGAGGGATACATTGTCACAGGGTCGAAGCAGGTCGAAATCGGTAATAAGTTATGCGAGGATGGCAAGAAGTATGGAGCGGAGAACACTTGCACCAGCGGAAGCACGCTGTCGAAGGCGGCGTTGTGTTTCGCCAAAGCACGCTCACTGATGGAGAAGGAGAGAGGGAACCTGCTGGAAGCACTGGGTACTCAGGTGGCAGAACCGTTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACAGGATGCGTCAGGAAGCCGAAGCACAGGCTATTGAAGTCTCGAAGCGCCAAATGAAATTAAGAGAAACATCTGGGAATGGTGATATGATTTCAAGATTAGAGGCTGCTGAATCAAAGTTGCAAGAGTTAAAGTCAAACATGGGGGTTCTAGGCAAGGAAGCCGTTGCATCAATGACTGCTGTTGAAGCTCAACAGCAAAGACTGACCTTGCAACGACTAATTGCAATGGTCGAATCTGAGAGAAGTTATCACCAGAGGGTTCTGCAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGAGCGCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGTTGAGAGTTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCCAACAGTCGC TGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGGCCATCCAGTCTTATCGTGCTGAGAGTGAAACTGAGCTCAACCTGGCAGCTGGTGACTATATAGTTGTCCGGAAGGTGTCAAACAATGGATGGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGGTTCCCTTACGACTACATCGAGAAAAGGGACCGTGTGCTTG CAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGCCATACATACATAACCCTGGTGTTGTACACTGTATTATGATCGTTCGTGATCTTCAAAGACCCTCTGATCAGAGAAATCACAAATATTCTTTTGTTCTATTATTGTCATTATCACTACCCCTTTTGTCAAAACCAGTGCAGCCTTTTGTATGACATCTTGTTGCATGGCTAGCTTTCTGAATATTTCAAAATATACAGCGGAGAGGA ]
[+] EMBL AU069481 [ GTTGAGGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACAGGATGCGTCAGGAAGCCGAAGCACAGGCTATTGAAGTCTCGAAGCGCCAAATGAAATTAAGAGAAACATCTGGGAATGGTGATATGATTTCAAGATTAGAGGCTGCTGAATCAAAGTTGCAAGAGTTAAAGTCAAACATGGGGGTTCTAGGCAAGGAAGCCGTTGCATCAATGACTGCTGTTGAAGCTCAACAGCAAAGACTGACCTTGCAACGACTAATTGCAATGGTCGAATCTGAGAGAAGTTATCACCAGAGGGTTCTGCAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGA CGCCAAAGAATTGAAGGAGCACCTNCTTCA CTGTTGAGAG TCTATGCCACCACCA CTTCATATGAAGAAATTAACNGTGTTTTCATGAGGAATCCAACAGTCGCTTGAATTGGTGGAAACTGT ]
[+] EMBL OSS10602A [ AGTCTCGAAGCGCCAAATGAAATTAAGAGAAACATCTGGGAATGGTGATATGATTTCAAGATTAGAGGCTGCTGAATCAAAGTTGCAAGAGTTAAAGTCAAACATGGGGGTTCTAGGCAAGGAAGCCGTTGCATCAATGACCGCTGTTGAAGCTCAACAGCAAAGACTGACCTTGCAACGACTAATTGCAATGGTCGAATCTGAGAGAAGTTATCACCAGAGGGTTCTGCAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGAGCGCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGTTGAGAGTTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCC ACAGTCGC TGAATTGGTGG AACTGTNGAA ]
[+] EMBL CA764097 [ CTAGGCAAGGAAGCCGCTGCATCAATGACTGCTGTTGAAGCTCAACAGCAAAGACTGACCTTGCAACGACTAATTGCAATGGTCGAATCTGAGAGAAGTTATCACCAGAGGGTTCTGCAGATTCTCGATCAACTTGAAAGAGAGATGGTATCTGAGCGCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGTTGAGAGTTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCCAACAGTCGC TGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGGCCATCCAGTCTTATCGTGCTGAGAGTGAAACTGAGCTCAACCTGGCAGCTGGTGACTATATAGTTGTCCGGAAGGTGTCAAACAGTGGATGGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGGTTCCCTTACGACTACATCGAGAAAAGGGACCGTGTGCTTG CAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGCCATACATACATAGCCCTGGTGTTGTACACTGTATTATGATCGTTCGTGATCTTCAAAGACCCTCTGATCAGAGAAATCACAAATATTCTTTTGTTC ]
[+] EMBL AU032470 [ GGGACCGTGTGCTTGTCAAGTAAAGTCGCCCAGGTCTTCTAGGCNTTCAATGAGCCATACATACATAACCCTGGTGTTGTACACTGTATTATGATCGTTCGTGATCTTCAAAGACCCTCTGATCAGAGAAATCACAAATATTCTTTTGTTCTATTATTGTCATTATCACTACCCCTTTTGTCAAAACCAGTGCAGCCTTTTGTATGACATCTTGTTGCATGGCTAGCTTTCTGAATATTTCAAAATATACAGCGGAGAGGACACTGTTCATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GGACCCTCCCAACGACCTAATTCCAATGGGGTCGGAATCTGGAGAGGAAGGTTAATCAACCCAGGAGGGGTTTCTTCCAAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGAGCCCCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGGTTGAGAGTTCTATCCCACCACCACCTTCATATGAAGAAATTACCGGTGTTTTCATGAGGAATCCCACACAGTCGCGTGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGCCATCCAATGTCTTATCGTCTGAGAGTGAAACTGAGCTCAACCTGCCAGCTGGTGACTATATAGTTTCCGGAAGGTNTCAANACAATGGATGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGNNTTCCCGTACAGACTACATCGAGAAAGGGCCCTNTGCTTGCAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGCCATACATACATAACCTGGTGTTGTACACTGTATTATGATCGTTCGGGATCTTCAAAGACCCTCTGATCAGAGAAATCACAATATTCTTTTGTTCTATTACCNCCCTAAAAAAAAAA]
[+] EMBL BI807100 [GGACCCTCCCAACGACCTAATTCCAATGGGGTCGGAATCTGGAGAGGAAGGTTAATCAACCCAGGAGGGGTTTCTTCCAAGATTCTTGATCAACTTGAAAGAGAGATGGTATCTGAGCCCCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGGTTGAGAGTTCTATCCCACCACCACCTTCATATGAAGAAATTACCGGTGTTTTCATGAGGAATCCCACACAGTCGCGTGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGCCATCCAATGTCTTATCGTCTGAGAGTGAAACTGAGCTCAACCTGCCAGCTGGTGACTATATAGTTTCCGGAAGGTNTCAANACAATGGATGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGNNTTCCCGTACAGACTACATCGAGAAAGGGCCCTNTGCTTGCAAGTAAAGTCGCCCAGGTCTTCTAGGCGTTCAATGAGCCATACATACATAACCTGGTGTTGTACACTGTATTATGATCGTTCGGGATCTTCAAAGACCCTCTGATCAGAGAAATCACAATATTCTTTTGTTCTATTACCNCCCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9388#0 AAGAAAGTAGCAAGCCGGAGTCGAGAGCCTCTCAACCCATCGGCCATCGCCCACCACCGC 60
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 CATTCGCCACCACCTCGCCTCCGATTCAGATCTCCCTCCCCCCCTTCCATTCCACGCCCA 120
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 TCGGATTCCCTCCCGATTCCGCTCCATTCCTCCCCGCCTCCGCCCCCATCTCCGCCGACC 180
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 TCGTCGTCGTCGGCGTCCTCATCCAGGCAGTCTCGGCGGCGATTCGATCGCCGCCACGGT 240
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 CGCCGATGGAGGCCATCCGGAAGCAGGCGTCCAAGCTCCGGGAGCAGGTCGCCCGGCAGC 300
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AGCAGGCCGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCGGACGGCGCGTTCGCCGACG 360
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AGGCCGAGGCGCAGCAGCACTCCAAGCTCGAGAAGCTCTACATCTCCACGCGCGCCGCTA 420
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AGCACTTCCAAAGGGACATAGTTCGCGGGGTGGAGGGATACATTGTCACAGGGTCGAAGC 480
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AGGTCGAAATCGGTAATAAGTTATGCGAGGATGGCAAGAAGTATGGAGCGGAGAACACTT 540
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 GCACCAGCGGAAGCACGCTGTCGAAGGCGGCGTTGTGTTTCGCCAAAGCACGCTCACTGA 600
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 TGGAGAAGGAGAGAGGGAACCTGCTGGAAGCACTGGGTACTCAGGTGGCAGAACCGTTGA 660
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 GGGCTATGGTGATGGGAGCTCCTTTGGAAGATGCTCGCCATCTTGCCCAAAGATACGACA 720
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 GGATGCGTCAGGAAGCCGAAGCACAGGCTATTGAAGTCTCGAAGCGCCAAATGAAATTAA 780
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 GAGAAACATCTGGGAATGGTGATATGATTTCAAGATTAGAGGCTGCTGAATCAAAGTTGC 840
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AAGAGTTAAAGTCAAACATGGGGGTTCTAGGCAAGGAAGCCGTTGCATCAATGACTGCTG 900
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 TTGAAGCTCAACAGCAAAGACTGACCTTGCAACGAC-TAATTGCAATGG---TCGAATCT 956
consensus_9388#1 -----------------GGAC---CCTCCCAACGACCTAATTCCAATGGGGTCGGAATCT 40
*** *** ******* ***** ****** ******
consensus_9388#0 G---AGAGAAGTTA------TCACCAGAGGGTTCTGC--AGATTCTTGATCAACTTGAAA 1005
consensus_9388#1 GGAGAGGAAGGTTAATCAACCCAGGAGGGGTTTCTTCCAAGATTCTTGATCAACTTGAAA 100
* ** * **** ** ** ** **** * *********************
consensus_9388#0 GAGAGATGGTATCTGAGCGCC-AAAGAATTGAAGGAGCACCTCCTCCAGCTG-TTGAGAG 1063
consensus_9388#1 GAGAGATGGTATCTGAGCCCCCAAAGAATTGAAGGAGCACCTCCTCCAGCTGGTTGAGAG 160
****************** ** ****************************** *******
consensus_9388#0 TTCTATGCCACCACCACCTTCATATGAAGAAATTAACGGTGTTTTCATGAGGAATCCAAC 1123
consensus_9388#1 TTCTATCCCACCACCACCTTCATATGAAGAAATTACCGGTGTTTTCATGAGGAATCCCAC 220
****** **************************** ********************* **
consensus_9388#0 A--GTCGC-TGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAGGCCATCCA--GTCT 1178
consensus_9388#1 ACAGTCGCGTGAATTGGTGGAAACTGTGGAATTCTTCTTGGCTGAG-CCATCCAATGTCT 279
* ***** ************************************* ******* ****
consensus_9388#0 TATCGTGCTGAGAGTGAAACTGAGCTCAACCTGGCAGCTGGTGACTATATAGTTGTCCGG 1238
consensus_9388#1 TATCGT-CTGAGAGTGAAACTGAGCTCAACCTGCCAGCTGGTGACTATATAGTT-TCCGG 337
****** ************************** ******************** *****
consensus_9388#0 AAGGTGTCAAA-CAATGGATGGGCAGAAGGTGAATGCAGAGGGAAAGCTGGCTGGTTCCC 1297
consensus_9388#1 AAGGTNTCAANACAATGGATGG-CAGAAGGTGAATGCAGAGGGAAAGCTGGCTGNNTTCC 396
***** **** ********** ******************************* * **
consensus_9388#0 T-TAC-GACTACATCGAGAAAAGGGACCGTGTGCTTGCAAGTAAAGTCGCCCAGGTCTTC 1355
consensus_9388#1 CGTACAGACTACATCGAGAAA--GGGCCCTNTGCTTGCAAGTAAAGTCGCCCAGGTCTTC 454
*** *************** ** ** * *****************************
consensus_9388#0 TAGGCGTTCAATGAGCCATACATACATAACCCTGGTGTTGTACACTGTATTATGATCGTT 1415
consensus_9388#1 TAGGCGTTCAATGAGCCATACATACATAACC-TGGTGTTGTACACTGTATTATGATCGTT 513
******************************* ****************************
consensus_9388#0 CGTGATCTTCAAAGACCCTCTGATCAGAGAAATCACAAATATTCTTTTGTTCTATTATTG 1475
consensus_9388#1 CGGGATCTTCAAAGACCCTCTGATCAGAGAAATCACAA-TATTCTTTTGTTCTATTACCN 572
** *********************************** ******************
consensus_9388#0 TCATTATCACTACCCCTTTTGTCAAAACCAGTGCAGCCTTTTGTATGACATCTTGTTGCA 1535
consensus_9388#1 CCCTAAAAAAAAAA---------------------------------------------- 586
* * * * *
consensus_9388#0 TGGCTAGCTTTCTGAATATTTCAAAATATACAGCGGAGAGGACACTGTTCATATAAAAAA 1595
consensus_9388#1 ------------------------------------------------------------
consensus_9388#0 AAAAAAAAAAAAAAAAAAAAAAA 1618
consensus_9388#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||