These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 759 fasta sequence [CCNGGAACACTTCGCCGGCGAC--GN-C-GG-CGGCGGCA-T-GGCCTTCTGGCA-GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA-TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA-GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC-TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC-AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC-TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA-TAA-GTGCGCAA-ACTGC-AGGCATGAGTTCAATGA-GAACCAGTAGTCACCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCAAAAATTAGCAGTTTGCCAAAAACATTGTATGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAGAATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA] [+] EMBL AU066015 [CCNGGAACACTTCGCCGGCGAC CN C GGTCGGCGTCANTNTGCCTTCTGGCANGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC TGAACTTCAGTATTACANCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA TAAGGTGCGCAANACTGCAAGGCATGANGTCAATGAGGAACCAGTNGTCACCTTAGAATGAGCTT ] [+] EMBL C27192 [ GAACACTTCGCCGGCGACGNGN C GG CGGCGGCA T GGCCTTCTGGCA GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACAC TGAAGGAGGAAGNCGTAATTGTCGAAAGAGCTACAAGTAAATAAAGAGTGTGAAAAATGCAAAAATCCTTGAACTTCAGTATTACAC ] [+] EMBL AU066018 [ GCCGGCGAC GNGCGGG CGGCGGCA T GGCCTTCTGGCA GGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTGCCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATA TCGAAGGGAAGGAGACGCGGTACACGGTCACGGCTGAGGATATTAGAAGA GAGCTAAAACTTGATCCATATGTGATTCTTGAAACAACACTTGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTG AAAATGCAAAAATCC TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATNAGGGGCAAACTTTTTTCTA TAA GTNCGCAA ] [+] EMBL AU088743 [ cAGCGCAA GCC AAGATATTCGAA GGAA GAGACGCGGTACAC GTCAC GCTGANGATATTAGAAGAGGAGCTAAAACTTGATCCATATGTGA TCTTGAAACAACAC TGAAGGAGGAAGACGTAATTGTCGAAAGAGCTAC AGTAAATAAAGAGTGTGAAAAATGCAAAAATCC TGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCAAACTGTTTTCTA TAA GTGCGCAA ACTGC AGGCATGAGTTCAATGA GAACCAGTAGTCACCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCAAAAA ] [+] EMBL AU032939 [ TACGGTCAGCAGATGAGGGGCAAACTGTTTTCTATTAA GTGCGCAA ACTGC AGGCATGAGTTCAATGA GAACCAGTAGTCNCCTTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGACATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGGTGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTATTAGTGCATTATTAATTAAGTACTTTAACGCATGGTTTAGCAGTTTGCCAAAAACATTGTATGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAGAATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA] consensusID : consensus_9395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [GCCGGCGACGGCGGCGGCGGCATGGCTTCTGGCAGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGCTCCGTCCGCTCCGCTCCTGCCCCTCTGCGCTTCAAGCGAAGGCAAGATATCGAGGGAAGAGCGCGTACACGTCACGCTGAGNTATTAGAGAGACTAAACTTATCCATATGTGATTCTTAAACAACACTGAAGGAGGAGCGAATTGTCGAAGGCTACAGTAAATAAAGAGTGTAAAATGCAAAATCTGACTNAGTATTCACAAGAGTTACGTCAGCAGTGAGGGCAACTGTTTCTATAAGNCGAACTCAGGATGAGTCAATGGACCAGTAGNACTAGATGANTTTTTATCATCTCGTTTGGCTAAAATGCATCTTGCATGCAAGTGTTTGAATATTTTTATGCTTCTGATATGCAGATGGGTTCGG] [+] EMBL AU088742 [GCCGGCGACGGCGGCGGCGGCATGGCTTCTGGCAGGCGCGGGACTTCCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGCTCCGTCCGCTCCGCTCCTGCCCCTCTGCGCTTCAAGCGAAGGCAAGATATCGAGGGAAGAGCGCGTACACGTCACGCTGAGNTATTAGAGAGACTAAACTTATCCATATGTGATTCTTAAACAACACTGAAGGAGGAGCGAATTGTCGAAGGCTACAGTAAATAAAGAGTGTAAAATGCAAAATCTGACTNAGTATTCACAAGAGTTACGTCAGCAGTGAGGGCAACTGTTTCTATAAGNCGAACTCAGGATGAGTCAATGGACCAGTAGNACTAGATGANTTTTTATCATCTCGTTTGGCTAAAATGCATCTTGCATGCAAGTGTTTGAATATTTTTATGCTTCTGATATGCAGATGGGTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9395#0 CCNGGAACACTTCGCCGGCGACGNCGGCGGCGGCATGGCCTTCTGGCAGGCGCGGGACTT 60 consensus_9395#1 -------------GCCGGCGACGGCGGCGGCGGCATGGC-TTCTGGCAGGCGCGGGACTT 46 ********** *************** ******************** consensus_9395#0 CCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCGACTCCGTCCGCTCCGCCTCCTG 120 consensus_9395#1 CCTCTTCTGCGGCGTGTGCGGCACCCTCCTCAAATTCG-CTCCGTCCGCTCCGC-TCCTG 104 ************************************** *************** ***** consensus_9395#0 CCCCCTCTGCGGCTTCAAGCGCAAGGCCAAAGATATCGAAGGGAAGGAGACGCGGTACAC 180 consensus_9395#1 CCCC-TCTGCG-CTTCAAGCG-AAGGC--AAGATATCGAGGGAAGAG---CGCG-TACAC 155 **** ****** ********* ***** ********** ** * * **** ***** consensus_9395#0 GGTCACGGCTGAGGATATTAGAAGAGAGCTAAAACTTGATCCATATGTGATTCTTGAAAC 240 consensus_9395#1 G-TCACG-CTGAGN-TATTA---GAGAGACTAAACTT-ATCCATATGTGATTCTT-AAAC 207 * ***** ***** ***** ***** ****** ***************** **** consensus_9395#0 AACACTGAAGGAGGAAGACGTAATTGTCGAAAGAGCTACAGTAAATAAAGAGTGTGAAAA 300 consensus_9395#1 AACACTGAAGGAGGAGCG---AATTGTCGAAGG--CTACAGTAAATAAAGAGTGT--AAA 260 *************** ********** * ******************** *** consensus_9395#0 ATGCAAAAATCCTGAACTTCAGTATTACACCAAGCAGTTACGGTCAGCAGATGAGGGGCA 360 consensus_9395#1 ATGCAAAA--TCTGA--CTNAGTATT-CACAAG--AGTTACG-TCAGCAG-TGAGGGC-- 309 ******** **** * ****** *** * ******* ******* ****** consensus_9395#0 AACTGTTTTCTATAAGTGCGCAAACTGCAGGCATGAGTTCAATGAGAACCAGTAGTCACC 420 consensus_9395#1 AACTGTTT-CTATAAG---NCGAACT-CAGG-ATGAGT-CAATGG--ACCAGTAGN-ACT 359 ******** ******* * **** **** ****** ***** ******** ** consensus_9395#0 TTAGAATGAGCTTTTTGATCACTTCTACGATTGTGGTCTAAAAAATGGCCATGCTTTGAC 480 consensus_9395#1 ---AGATGANTTTTT--ATCATCTC-----GTTTGG-CTAAAATGCA-------TCTTGC 401 **** **** **** ** * *** ****** * * * consensus_9395#0 ATGACAAGTGATTTTGAAATATTTTTTTTATGCCTTTGCTTGAATTATGACAAGTAATGG 540 consensus_9395#1 ATG-CAAGTG--TTTGAA----TATTTTTATGCTTCTGAT---ATGCAGATGGGTTCGG- 450 *** ****** ****** * ********* * ** * ** ** ** * consensus_9395#0 TGTGTTCGGGAGAAGGGTTTAGGAACCTCTTCCCCGTGCATGGAAAACGGGGTGGCTTAT 600 consensus_9395#1 ------------------------------------------------------------ consensus_9395#0 TAGTGCATTATTAATTAAGTACTTTAACGCAAAAATTAGCAGTTTGCCAAAAACATTGTA 660 consensus_9395#1 ------------------------------------------------------------ consensus_9395#0 TGTGCTTGGAAAACGAGGGAGAAGAAGTTGGTAAAGTGTAGTATAGAACATACCCTAAAG 720 consensus_9395#1 ------------------------------------------------------------ consensus_9395#0 AATCACATTACTTTGGGCCACAAAAAAAAAAAAAAAAAA 759 consensus_9395#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||