These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 768 fasta sequence [CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAGAAAAAGAGTTTGAGAGAGATCTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGTGGTGAGATTGGTGGAGAAGCAGCAGGCGACGGCGGGGACGGCGGTGGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCAGGTGGTGTCGT-CGTACGCGGCGCTGGAGGCGC-GGCTGACGGCGCTCGGGTGGGAG-CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC-TT-CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT] [+] EMBL AK070626 [CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAGAAAAAGAGTTTGAGAGAGATCTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGTGGTGAGATTGGTGGAGAAGCAGCAGGCGACGGCGGGGACGGCGGTGGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGTGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCAT CACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGATATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT] [+] EMBL CA764839 [ GGCGGGAGGGAGGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCACGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAAT ] [+] EMBL AU071162 [ cgCGCCGAGCGGGCAGGTGGTGTCGT CGTACGCGGCGCTGGAGGCGCGGGCTGACGGCGCTCGGGTGGGAGCCGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCCTTT CCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGATTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTaaaaaa ] [+] EMBL AU071184 [ GGCAGGTGGTGTCGTCCGTACGCGGCGCTGGAGGCGC GGCTGACGGCGCTCGGGTGGGAG CGCTACTACGAGGACCCCTCCCTCTTCCAGTTCCACAAGCGTGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACTCC TTNCCGCGTCGTCGACGCCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGATTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTaaaaaa ] [+] EMBL AU070762 [ CGACTCC TT CCGCGTCGTCGAC CCTAAATTGACCTATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTATCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTATTATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTGGTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATTATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGTGGCTGATGCATATATATAGAGGTCTTTAATAAaaaaaaaa ] consensusID : consensus_9484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [GATCGAGGAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTACTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAATCAC] [+] EMBL AY304538 [GATCGAGGAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGTGGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGAGGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTACTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCGCTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACATGTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9484#0 CCCATAGCTATCTCTAGCTAGCTTGCACATTCTTCATTCTTCTTGCAATCAGAGCTAGAG 60 consensus_9484#1 -----------------------------------------------------GATCGAG 7 * * *** consensus_9484#0 AAAAAGAGTTTGAGAGAGAT-CTAAGAGATGTCAGGGGTTTGGGTGTTCAAGAACGGGGT 119 consensus_9484#1 GAATTCAGTTAAGCAAAAATATTTATACATGTCGGGCGTGTGGGTGTTCCGGAACGGGGT 67 ** **** * * ** * * * ***** ** ** ********* ********* consensus_9484#0 GGTGAGATTGGTGGAGAA-----------------GCAGCAG--------GCGACGGCGG 154 consensus_9484#1 GGTGAAGCTGGTGGAGAACCCGCCGGCGTCGGCGAACAGCGGCGGCGGCGGCGGCGGCGG 127 ***** ********** **** * *** ****** consensus_9484#0 GGACGGCGGTGGCGGGAGGGA-----GGAGGAAGGCGCTGGTGCACACGCCGAGCGGGCA 209 consensus_9484#1 CGGCGGCGGTGGCGGCGGCGGCATCCGGCGCAAGGCGCTGCTGCACATGCCGACGGGTGA 187 * ************ * * ** * ********* ****** ***** ** * consensus_9484#0 GGTGGTGTCGTCGTACGCGGCGCTGGAGGCGCGGCTGACGGCGCTCGGGTGGGAGCGCTA 269 consensus_9484#1 GGTGGTCACCTCCTACGCCTCCCTGGAGCGCAAGCTCGCCGCGCTCGGCTGGGAGCGCTA 247 ****** * ** ***** * ****** *** * ******** *********** consensus_9484#0 CTAC---------GAGGACCCCTCCCTC---------------TTCCAGTTCCACAAGCG 305 consensus_9484#1 CTACTCCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCATGATGCTCCAGTTCCACAAGCG 307 **** * * * ** ** * **************** consensus_9484#0 TGGCTCCCTCGACCTCATCTCCCTCCCCGCCGACTTCTCCGCCTTCTCCTCCGTCCACAT 365 consensus_9484#1 CTCGTCGGTGGACCTGATCTCGCTGCCCAAGGACTTCTCCCAGTTCGGCTCCGTCCACAT 367 ** * ***** ***** ** *** ********* *** ************ consensus_9484#0 GTACGACATCGTCGTCAAGAACCGCGACTCCTTCCGCGTCGTCGACGCCTAAATTGACCT 425 consensus_9484#1 GTACGACATCGTCGTCAAGAACCGCGACGCCTTCCGAGTCATCGACGTCTAA--TCAC-- 423 **************************** ******* *** ****** **** * ** consensus_9484#0 ATGTATAGGCTCGCATGCATGCAAGGTAGACGACCATCCACCTTGCATGCATGCAGGCTA 485 consensus_9484#1 ------------------------------------------------------------ consensus_9484#0 TCATTCTCTCTTCGTCTCCGTCTTCGTCTTTCATCTTTGTTGTGGTGTGTGTGAATTTAT 545 consensus_9484#1 ------------------------------------------------------------ consensus_9484#0 TATACTTCTTATGACTGTGTGTGTGACTGTGTGAGAGTTCATGGAGAGTGATGAGTAGTG 605 consensus_9484#1 ------------------------------------------------------------ consensus_9484#0 GTATACATATGTGTCGTCGCTGATCGATTTGGTTTATTACCTTGTGGGTGGGTATTAATT 665 consensus_9484#1 ------------------------------------------------------------ consensus_9484#0 ATCAGCAGTGTGTTATATCAATTGCTTACTTGTATGTGTATCATGTACATGAGTGAGTGT 725 consensus_9484#1 ------------------------------------------------------------ consensus_9484#0 GGCTGATGCATATATATAGAGGTCTTTAATAATTATGTACTAT 768 consensus_9484#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||