These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1374 fasta sequence [GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAA-GGCGGCGGAGGAGTGGGAGGGCCCGAC-GGCGGCGGAGTTGAAGGCGG-CCGAAG-GGGAGGAGAT-CCAGGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATTTCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTCCTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATA-CTT-GATTATGACTATACATT-CACGACACCGTACAATGGGAGTGATGCTTTGG-TTCAGAACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA-CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG-CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGGGGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA] [+] EMBL OS0768A [GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGGCGGCGGAGGAGTGGGAGGGCCCGACGGGCGGCGGAGTTGAAGGCGGACCGAAGAGGGAGGAGATACCAGGGCGG ] [+] EMBL AK103511 [ CTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCGGCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCCGGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAA GGCGGCGGAGGCGTGGGAGGGCCCGAC GGCGGCGGAGCTGAAGGCGG CCGGCG CGGAGGCGAT CCCCGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATTTCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTCCTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATA CTT GATTATGACTATACATT CACGACACCGTACAATGGGAGTGATGCTTTGG TTCAGAACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCG TTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTT ] [+] EMBL C98137 [ AGTAATACCTTGGATTATGACTATACATTNCACGACCCCGTACAATGGNAGTGATGCTTTGGTTTCAG ACCCAGATAGTATTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGACCCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGGGGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA] [+] EMBL AU075993 [ tcnCTTTGG TTCAGACCCCAGATAGTATNCAAACAAGTTTGGATGAACCCCGTAATTTGTGTTGGGAGGATTCTGAGGATCGGATTGA CCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATGAAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAG CAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTACTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAAaaaaaaaa ] [+] EMBL BI805099 [ GCGAGTGAGGGTGATGCCAACTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGAGGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAGCCAAAACCCATTGTACTGCGTGAATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACTCTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGATCC AAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTTTTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGGATGCACGTTCCTGTAGCTGGC ATAGTATAAAAATTCTTGTGGTAAAaaaaa ] consensusID : consensus_9498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGCGGCGGAGNGTGGGAGGGCCCGACGGCGGCGGACTGAAGGCGCCGGCNGGAGGNATCCCCGGCGGTTGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATTTCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG] [+] EMBL C26548 [CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGGGCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTAAGGCGGCGGAGNGTGGGAGGGCCCGACGGCGGCGGACTGAAGGCGCCGGCNGGAGGNATCCCCGGCGGTTGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCCTCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGATGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATTTCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9498#0 GTCGGGCTCGCCTCTCGACCTCGGTGTTGCGCTCTCCTCCGCTCGGACCGCTCCTCGCCG 60 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 GCGATCCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCCGTCGATCTGCGCTGCCACGGCC 120 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 GGGGGGGAAGCTTGTGCTGAGGCGCAGTCCTGAAGAGAACCCCACTTGGGAGGCCGGGGG 180 consensus_9498#1 ---------------------CNGNGGGANTANNCNCNCCACNTNTNGGGANGGCCGGGG 39 * * * * * * **** * * **** consensus_9498#0 GCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTA 240 consensus_9498#1 GCGTCGAAGCTCCAAACAACCAAGCACCATCGTGACGAAGCACGCCACGGGAGATGACTA 99 ************************************************************ consensus_9498#0 AGGCGGCGGAGGAGTGGGAGGGCCCGACGGCGGCGGAGTTGAAGGCGGCCGAAGGGGAGG 300 consensus_9498#1 AGGCGGCGGAGN-GTGGGAGGGCCCGACGGCGGCGGA-CTGAAGGCGCC---GGCNGGAG 154 *********** ************************ ******** * * * * consensus_9498#0 AGATCCAGGGCGGGGTGCGGGTGAAGGGGTGGGTCATCCGGTCCCACAACGGCCCCATCC 360 consensus_9498#1 GNATCCCCGGCGGT-TGCGGGTGAAGGGGTNGGTCATCCGGTCCCACAACGGCCCCATCC 213 **** ***** *************** ***************************** consensus_9498#0 TCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGA 420 consensus_9498#1 TCAACTCCGCCTCGCTCCAGCTCTTTGAAGATAAACTTCAGACAACACATTTACCTGAGA 273 ************************************************************ consensus_9498#0 TGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTGGCATTAGATTATATT 480 consensus_9498#1 TGGTTTTTGGGGAGAGTTTCTTATCTCTTCAGCATGCTCAAACTTGCATTAGATTATATT 333 ******************************************** *************** consensus_9498#0 TCAATGCGCTTGATGCTCTGAAGGCATGGAAACATGAAGCACTACCACCTGTTGAAGTTC 540 consensus_9498#1 TCAATGCGCTTGATGCTCTNAAGGCATGGAAACATGAAGCACTACCACCTG--------- 384 ******************* ******************************* consensus_9498#0 CTGCGGCAGCAAAGTGGAAGTTCAGGAGTAAGCCTTCTGATCAAGTAATACTTGATTATG 600 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 ACTATACATTCACGACACCGTACAATGGGAGTGATGCTTTGGTTCAGAACCCAGATAGTA 660 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 TTCAAACAAGTTTGGATGAACCCCGCAATTTGTGTTGGGAGGATTCTGAGGATCGGATTG 720 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 ACCTTGTTGCCCTTTCAGCAAAAGAACCAATTCTTTTCTATGACGAGGTTATCCTGTATG 780 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 AAGATGAGTTAGCCGATAATGGCATTTCATTCCTCACTGTGCGAGTGAGGGTGATGCCAA 840 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 CTGGTTGGTTCCTGCTCTTGCGTTTTTGGCTTAGGGTTGATGGTGTACTTATGAGATTGA 900 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 GGGATACCCGGGTGTATTGCTCTTTTGGTAGTGACGAAGCAAAACCCATTGTACTGCGTG 960 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 AATGCTGCTGGAGGGAAGCAACATTTGCTAGTCTGTCTGCGAAGGGATACCCTTCCGACT 1020 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 CTGCAGCATATGGAGACCCGAATCTTATTGCTCATAAGCTTCCAGTTGTGATGCAGAAGA 1080 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 TCCAAAAGCTGAAATTACCCAATTAACCCGACAACCCATCTCGTGTACATCAGCGTTTTT 1140 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 TTTTTCCATTGACTGTTGGACGGTGTTCTCTTTCTGCTTATCATGTGCTGTGGTCTGTGG 1200 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 ATGCACGTTCCTGTAGCTGGCAATAGTATAAAAATTCTTGTGGTAAAGGCTATTTGTCTA 1260 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 CTGGGGCTTATCAGCTTTTAACTCTCATTCTCGCCATGCTTGAATAAGACGCTTCAACGG 1320 consensus_9498#1 ------------------------------------------------------------ consensus_9498#0 GGCTTTGCATGTTTCTGATACAGANCGAGTTTACAGAGTTCAGACTAAAAAAAA 1374 consensus_9498#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||