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Oryza sativa
cluster # 9525 cluster # 9525       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9525#0 length = 1024 sequences # 6  

consensusID : consensus_9525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1024
fasta sequence
                              [CTCCCACCACCCTCGTCTCTCCCCTCCACTTCGCGAGACCTCCAAAACCCTAGTTTCGTCGGCGATGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCGGGTGGGGGGTTCGTTGGGGAGAGGAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCAGGAGGCGGAGCTGCGGGGCCACTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCATGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGGCGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGAGTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAGTATGACAAACAGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCAGAGGAAGCGGTGAGGAAGGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAGATTGCCATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGGTGGAAGGGGTCATGCTGGTTTTGATGGTCCCTCGTACCAACCATACAATGACAGATATGGTTTCTACAACAGCTATAATATGCCTCAACCTGTTCCACCACATCCCTACTATCCTGGTGTATATTATGGTATGGG-AGGAGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCCCTGCTAATATTCCTCCAGGCATGATGACNAGGCGTCCAGTTTATGGTGCATATCCTCCAATGTTT]

[+] EMBL AK073437             [CTCCCACCACCCTCGTCTCTCCCCTCCACTTCGCGAGACCTCCAAAACCCTAGTTTCGTCGGCGATGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCGGGTGGGGGGTTCGTTGGGGAGAGGAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCAGGAGGCGGAGCTGCGGGGCCACTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCATGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGGCGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGAGTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAGTATGACAAACGGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCAGAGGAAGCGGTGAGGAAGGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAGATTGCCATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGGTGGAAGGGGTCATGCTGGTTTTGATGGTCCCTCGTACCAACCATACAATGACAGATATGGTTTCTACAACAGCTATAATATGCCTCAACCTGTTCCACCACATCCCTACTATCCTGGTGTATATTATGGTATGGG AGGAGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCCCTGCTAATATTCCTCC                                                 ]
[+] EMBL CB658915             [                    CCCCTCCACTTCGCGAGACCTCCAAAACCCTAGTTTCGTCGGCGATGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCGGGTGGGGGGTTCGTTGGGGAGAGGAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCAGGAGGCGGAGCTGCGGGGCCACTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCATGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGGCGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGAGTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAGTATGACAAACAGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCAGAGGAAGCGGTGAGGAAGGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAGATTGCCATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGGTGGAAGGGGTCATGCTGGTTTT                                                                                                                                                                                                                               ]
[+] EMBL CB643838             [                           ACTTCCCGAGACCTCCAAAACCCTAGTTTCGTCGGCGATGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCGGGTGGGGGGTTCGTTGGGGAGAGGAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCAGGAGGCGGAGCTGCGGGGCCACTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCATGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGGCGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGAGTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAGTATGACAAACAGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCACAGGAAGCGGTGAGGAACGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAG                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BF889448             [                                                                                                      GGGGTTCGTTGGGGAGAGGAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCATGANGCGGAGCTGCGGGGCCACTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCATGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGGCGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCANCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAAGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU088622             [                                                                                                                                                                                                                                                                                                                                                          GTCAAGAGGGCTAGGGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGGTCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCATGAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGAGTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAGTATGACAAACAGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCAGAGGAAGCGGTGAGGAAGGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAGATTGCCATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGGTGGAAGGGGTCATGCTGGTTTTGATGGTCCCTCGTACCAACCATACAATGACAGATATGGTTTCTACAACAGCTATAATATGCCTCAACCTGTTCCACCACATCCCTACTATCCTGGTGTATATTATGGTATGGGNAAGGGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCCCTGCTAATATTCCTNCAGGCATGATGACNAGGCGTCCAGTTTATGGTGCATATCCTCCAATGTTT]
[-] EMBL CB643839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCCATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGGTGGAAGGGGTCATGCTGGTTTTGATGGTCCCTCGTACCAACCATACAATGACAGATATGGTTTCTACAACAGCTATAATATGCCTCAACCTGTTCCACCACATCCCTACTATCCTGGTGTATATTATGGTATGGG AGGAGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCCCTGCTAATATTCCTCCA                                                ]


>consensus_9525#0 CTCCCACCACCCTCGTCTCTCCCCTCCACTTCGCGAGACCTCCAAAACCCTAGTTTCGTC GGCGATGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCGGGTGGGGGGTTCGTTGGGGAGAG GAGGAAGCTGTTCGTGGGAGGGATCCCGACGTCGGCGCAGGAGGCGGAGCTGCGGGGCCA CTTCGGGCAGTACGGGGCGGTGAGGTCGGTGATCGTGATGCGGGACAAGGAGACCGGGCA TGGCCGGGGGTTCGGGTTCGTGGAGTTCGAGGAGGAGGAGGACGCCGCCAGGGCGCTCGG CGACGGGGAGCACCCCAGGCACCTCATCTGCGGCCGCGTCGTTGATGTCAAGAGGGCTAG GGCAAGGCCTCAACGAAACCATGATGATCAATCTTCACAGCATCAGCACTTCGGACAGGG TCAGGATCAGGGTCACCAGCCAGCACCTGTGAGTGGTACAGAGGATGGCGGCGACGGCAT GAACTATGCTTCGAAGAAGGTCTTTATTGGTGGTCTGCGGGACAACATCACTGAGGAGGA GTTCAAGACATATTTCGAGAGTTTTGGCACCGTAACAGATGTGGTAGTCATATATGACAG TATGACAAACAGGTCTAGGGGGTTTGGTTTCGTCACCTTTGACTCAGAGGAAGCGGTGAG GAAGGTGATAGAACACAGTTTTCATGACTTGAAAGGAACAAGGGTAGAAGCCAAGATTGC CATCCCCAAGGATGCTTCGTATTACCGTAATGGCAGAGGTCGTGGCTCAAGAAACTTTGG TGGAAGGGGTCATGCTGGTTTTGATGGTCCCTCGTACCAACCATACAATGACAGATATGG TTTCTACAACAGCTATAATATGCCTCAACCTGTTCCACCACATCCCTACTATCCTGGTGT ATATTATGGTATGGGAGGAGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCCC TGCTAATATTCCTCCAGGCATGATGACNAGGCGTCCAGTTTATGGTGCATATCCTCCAAT GTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)