These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1401 fasta sequence [TGCTCTCCCTTTAATCCTTAGCCCCAATCAGCGCCATACTGTTGTACTCTCTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTACGGCATCGGCATGCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGAGCTGAGTAGGGAAATTAAGATCAT] [+] EMBL AK100894 [TGCTCTCCCTTTAATCCTTAGCCCCAATCAGCGCCATACTGTTGTACTCTCTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTACGGCATCGGCATGCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCC ] [+] EMBL AK100932 [ GCACAATCTTTTCTTCTTCCTTTCTTTCTCCTCTTCCTTTATATTCCCCCACCTCCATGCTCGCGAGCTTTAGTGAGCACAGTGAATTAAAGCGAAGCGATGTGAAAATATAATTGTGTACATGTGTGTTGATGGATGTGTGCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAGCTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATC ] [-] EMBL CB684389 [ CGCTCGACTCCTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGGTTAGAACTAATTAATTACATGTTATTTATATC ] [+] EMBL CB652112 [ GCTCGACCCTTCCGACGTCGAGCTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCACTACGCCGTCAAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCCGACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATGGTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACCGTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAGGGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTCGTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCGGCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGTGGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACACGATGGTGTACCTGAACCTGGGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGCAGAGGGCCATCCTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGGCCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATATCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGAGCTGAGTAGGGAAATTAAGATCAT] consensusID : consensus_9530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence [GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCGCCGCCGCCGCCGCCGCGGCGACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTACGAGGTGTTCCTGCTGCT-CCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTCGCCCTCCTCACCC---AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTCGTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCA] [+] EMBL CB684388 [GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCGCCGCCGCCGCCGCCGCGGCGACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTACGAGGTGTTCCTGCTGCT CCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTCGCCCTCCTCACCC AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTCGTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTC ] [+] EMBL AU090498 [ CTACGAGGTGTTCCTGCTGCTCCCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAGAAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCA TGCGCCGCCGCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCT CTTCGGCGTCGAGGAGCTCGCCCTCCTCACCCAGAAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATGAAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCACCTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTCGTCGCCAAGATCGACGAG TCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCGCACCACCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9530#0 -----TGCTCTCCCTTTAAT----CCTTAGCC-CCAATCAGCGCCATACTGTTGTACTCT 50 consensus_9530#1 GCCCGCGCTCCCCTTCCGGCGGCGCCTCCGCCTCCTCCCCGCGCGGCGCCGGGGGCTCCG 60 **** ** * *** *** ** * **** * * * * consensus_9530#0 CTGTTCCCCTCCTTATATTTTATGCACAGGGCCAATCCACTA--CGGCATCGGCATGCAC 108 consensus_9530#1 CCGCCGCCGCCGCCGCGGCG-ACGCCCGGCGCCGTGATACCGGTCAGCTCGGTCAGCTAC 119 * * ** * * ** * * *** ** * ** * ** ** consensus_9530#0 AATCTTTTCTTCTTCCTTTC----TTTCTCCTCTTCCTTTATATTCCCCCACCTCCATG- 163 consensus_9530#1 GAGGTGTTCCTGCTGCTCCTCCAGTTCCTGTACAGCGGTCAGGTGTCGCTGGTGCCGCAG 179 * * *** * * ** ** ** * * * * * * * ** consensus_9530#0 ----------CTCG--CGAGCTTTAGTGAGCACAGTGAATTAAA--------GCGAAGC- 202 consensus_9530#1 AAGGGTGAGCCACGGCCGGGCTGCGGCGAGCGCGGCTGCTGGCACACCCACTGCGCCGCC 239 * ** ** *** * **** * * * * *** ** consensus_9530#0 GATGTGAA----------AATATAATTGTGTACATGTGT---------GTTGATGGATGT 243 consensus_9530#1 GCCGTCGACCTCGCCCTCGACACCCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGGAGCTC 299 * ** * * * * * * * * ** ** * consensus_9530#0 GTGCAGA------AGCAGCTGGCAGGCATGGTGGAGAAGGCGTCGATCGAGGACGTGATG 297 consensus_9530#1 GCCCTCCTCACCCAGCAGCTGGCAGGCATGGTGGAGAAGGCGTCCATCGAGGACGTGATG 359 * * ******************************* *************** consensus_9530#0 AAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCAC 357 consensus_9530#1 AAGGTGCTTATGGCGTCGAGGAAGCAGGACCTGCACCAGCTGTGGACAACGTGCTCCCAC 419 ************************************************************ consensus_9530#0 CTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCGCCAAGCACCTCCCCATCGACGTC 417 consensus_9530#1 CTCGTCGCCAAGTCGGGGCTCCCGCCGGAGGTGCTCACCAAGCACCTCCCCATCGACGTC 479 ************************************ *********************** consensus_9530#0 GTCGCCAAGATCGACGAGCTCCGCCTCAAGTCCATGTCGCGCCGCTCGCCGTTCCTCTCG 477 consensus_9530#1 GTCGCCGAGATCGACGAGCTCCGCCTCAAGTCGATGTCGCGCCGCTCGCCGTTCCTCTCG 539 ****** ************************* *************************** consensus_9530#0 CACCACCACCACCACCCGCACGCGGCCGCCGCCGGCATCGAGGCGTCGTCGGCGGCCGAG 537 consensus_9530#1 CACCACCACCA------------------------------------------------- 550 *********** consensus_9530#0 CTCGACGACCACCACAAGATCCGCCGCATGCGCCGCGCGCTCGACTCCTCCGACGTCGAG 597 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 CTCGTCAAGCTCATGGTGATGGGGGAGGGGCTCAACCTCGACGACGCCCTCGCGCTGCAC 657 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 TACGCCGTCGAGAACTGCAGCCGGGAGGTGGTCAAGGCGCTGCTGGAGCTCGGCGCCGCC 717 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GACGTCAACCACCCGGCGGGCCCCGCCGGGAAGACGCCGCTGCACGTCGCGGCGGAGATG 777 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GTGTGCCCGGACATGGTGGCCGTGCTGCTCGACCACCACGCCGACCCCAACGTCCGCACC 837 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GTCGACGGCGTCACGCCGCTCGACATCCTCCGCACGCTCACCTCCGACTTCCTCTTCAAG 897 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GGCGCCGTGCCCGGCCTGGCGCACATCGAGCCCAACAAGCTCCGCCTCTGCCTGGAGCTC 957 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GTGCAGTCGGCGGCCATGGTGATGTCCCGGGAGGACGCCCAGACCGCCGCGGTCAATGCG 1017 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GCGCCCATCTACGGCGAGTCCCCCGGCGGCGGCGGCGGCGGTGGCGTGTACAATGCCAGT 1077 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GGCACCAGCTCGAGCATGGTGAACCTGAGCTTGGACAACAGGATGGTGTACCTGAACCTG 1137 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GGGATGGACGCGCAGTTCGGGAAGATGAACGACGGTGGCGACGGCGACGACGGCGGGAGC 1197 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 AGAGGGCCATCGTCGTTGTTCTCCCCACATGGCTTCCCCTGACGACGAAAGGGGGTGTGG 1257 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 CCGCTTCTGCTCTACTATCTCCTTGTAAGCTTAGAACTAATTAATTACATGTTATTTATA 1317 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 TCCACATTACAGGAGATGAGAATGATCCTTTTGGGCTATTTTTTTAATCTCTCTGATCGA 1377 consensus_9530#1 ------------------------------------------------------------ consensus_9530#0 GCTGAGTAGGGAAATTAAGATCAT 1401 consensus_9530#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||