These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1177 fasta sequence [TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC-CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA-AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGATCATACCAACTATGACAATGC-TGTGA-GAAAAACCGGCATAGAGAAGT-CACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCCAAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA] [+] EMBL OSC104511 [TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGCACGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGTTACNATNTCCAGGGNGGTCTGTTAATCCAAACANTCATCATGGAGATACTGAAGCACTCNCTAAGGCCTCTCCCCTGCA ] [+] EMBL AK065662 [ GGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGATCATACCAACTATGACAATGC TGTGA GAAAAACCGGCATAGAGAAGT CACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCG ] [+] EMBL CF281185 [ GGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGAGTC ] [+] EMBL AU092089 [ TGCTTGTGANGAAAACCCGGCATAGAGAAGTCCACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAACCAA GGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCCAAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA] [-] EMBL AU225772 [ ccgctGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGAGCggc ] consensusID : consensus_9539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAAA] [-] EMBL CF281186 [GTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9539#0 TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGA 60 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 ATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCA 120 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 GCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGCCGAAAT 180 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 GGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCT 240 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 CTACACACAGTATTTCGAAAATGCCCGCAAGGGTAAATCTCCAGGGAGGTCTGTTAATCC 300 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 AAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATC 360 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 TGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCG 420 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 TCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGA 480 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 TCATACCAACTATGACAATGCTGTGAGAAAAACCGGCATAGAGAAGTCACCCGTTCATCC 540 consensus_9539#1 ------------------------------------------------------------ consensus_9539#0 CCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAG 600 consensus_9539#1 --------------------------------------------------------GTAG 4 **** consensus_9539#0 GGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAG 660 consensus_9539#1 GGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTG-AAGGTCCAAGTTCAG 63 ******************************************** *************** consensus_9539#0 ATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGA 720 consensus_9539#1 ATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGA 123 ************************************************************ consensus_9539#0 ATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAG 780 consensus_9539#1 ATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAG 183 ************************************************************ consensus_9539#0 GGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATAT 840 consensus_9539#1 GGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATAT 243 ************** ********************************************* consensus_9539#0 CAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAA 900 consensus_9539#1 CAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAA 303 *************************************** * * **************** consensus_9539#0 GAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTT 960 consensus_9539#1 GAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTT 363 ********************** ** ******************************** consensus_9539#0 GAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTG 1020 consensus_9539#1 GAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTG 423 ************************************************************ consensus_9539#0 GTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCT 1080 consensus_9539#1 GTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAA 483 *********************************** * ** ********** consensus_9539#0 TTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCC 1140 consensus_9539#1 A----------------------------------------------------------- 484 consensus_9539#0 AAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA 1177 consensus_9539#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||