These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence [TCTTCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGTT] [+] EMBL AK107784 [TCTTCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGT ] [-] EMBL CB660663 [ CACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAGCAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGGAAGCGCATGG ] [+] EMBL CA764196 [ TGCACGATTCCGAGGATGCGAGGATCATCCATGAGATCGATTGCGGCAAAAGGGTGCTCGCCTTCGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTAAATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTGTCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCAGCCTCATCAGATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGCCTACTCCATTAGCAGAGGCTAAGACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCT GGAAAGCAGAAGTGAAGCGGATGTGGAGCTAAA TTGAAGTGAGGCCGTGGTACCAATTTTGTGATCTTTAGTTTTTAGTCTAGTCCCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAACTCGATGTATGGGAAGTGTATGATAGCCATAAGTTATACATCACCATAGTCTGGCTTGAGGCCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGTT] consensusID : consensus_9561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCTGCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCCGCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGAT] [+] EMBL CB660662 [CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCTGCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCCGCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGGTCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCGACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCCGCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTGTCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCCGCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCGCCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGGATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAAAGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCAGTGGCAAGGTTACATCACGCATTGAGGAT] consensusID : consensus_9561#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA] [+] EMBL AU095405 [TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAA] [+] EMBL AU095408 [TGAATTGAGCTAAGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAATTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTGGCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9561#0 ------------------------------------------------------------ consensus_9561#1 CGGAAACCCTAGCCCTCGCGCCGCTCTTCTCCTACCCGGCCCACGCGGGGCCCATCCGCT 60 consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 ---------------------------------------------------------TCT 3 consensus_9561#1 GCGCCGCCGCGGCGGCGCGCGCGGGGCTCGCGGCGTCGGGCGGCTCCGACGACACCGTCC 120 consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 TCCCAAACCCTCCTCCTCTCACCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGG 63 consensus_9561#1 GCCTCTACGACCTCCCCGCCGCCGCCGACCTCGGCCCGCTCCTCGACCCCGCCGCGCCGG 180 consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 TCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCG 123 consensus_9561#1 TCTCCGCCCTCGCCATCCACTCCCTCGGCCCCGTCCCGCGCAACCTCCTCGCCGCCTCCG 240 consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 ACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCC 183 consensus_9561#1 ACGACGGCCTCCTCCACCTCTACGACGCCGGCGAGGGGTTCCCGCTCCTCGCCTCGCTCC 300 consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 GCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCTTCGCCGTGCACCCCACGGGGCGTG 243 consensus_9561#1 GCGTCTTCCCGCGCCACCGCGAGCCCGCCGACGCCCTCGCCGTGCACCCCACGGGGCGTG 360 consensus_9561#2 ------------------------------TGAATTGAGCTAAGGAAAGCA-GAAATGAA 29 ** * * ** * * consensus_9561#0 TCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCC 303 consensus_9561#1 TCGCGCTCGCCGTCGGCCGCTCGGGGGGCCTCGCCATGCTCAACCTCCTCCGCGGCCGCC 420 consensus_9561#2 GCGGACGTGGAGCTAAATTGTTGAATTGA--GGCCGTGGT--ACCAATTTTGTA--CTCT 83 ** * * * * * * *** ** * *** * * * * consensus_9561#0 GCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCG 363 consensus_9561#1 GCAGCTTCTCCTGCCGCCTCGAGCACCCGGCCACGGCGATCGCCTACGCCGAGGATGGCG 480 consensus_9561#2 TTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAACCGAGGAGCTCG 143 ** ** * * * *** * ** * * * ******* ** consensus_9561#0 CCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGG 423 consensus_9561#1 CCGGTGGGGACCGCTTCGTGATGGCCGCCGAGGAGAAGGTGACCGTGCACGACTCCGAGG 540 consensus_9561#2 ATGTATGGGAC--ATGTATGATAGCCAT-AAGTTATGCATCACCATAGTCTGGCTTGAGG 200 * ***** * **** *** ** * *** * * **** consensus_9561#0 ATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAA 483 consensus_9561#1 ATGCTAGGATCATCCATGAGATCGACTGCGGCAAAAGGGTGCTCGCCTTTGCGCCTGCAA 600 consensus_9561#2 GC-CTAAACTGCTTAATG-------TTTATGCAAGCGCATGGTT-CTATTGTAAAAAAAA 251 *** * * *** * **** * ** * * *** ** consensus_9561#0 AGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCA 543 consensus_9561#1 AGAAGGGAATACTTTACACTGGAGGAGAGGAACGCGGTATTACTGCTTGGGATCTTTCCA 660 consensus_9561#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AA 306 * ** ** * * * * * * ** * * * * consensus_9561#0 GTGGCAAGGTTACATCACGCATTGAGGATGCTCATTCAACTCGTGTGAAAGGGATTGTTG 603 consensus_9561#1 GTGGCAAGGTTACATCACGCATTGAGGAT------------------------------- 689 consensus_9561#2 AAAANAAAA--------------------------------------------------- 315 ** consensus_9561#0 TCTTCGACGACAAGAACGATGGATCTGAACTGTGCAACCTAATTGCTTCGGCCTCATCAG 663 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 ATGGTATAATAAGGATCTGGGATGCTCGGATGATTGCAAAAGAGAAGACTACTCCATTAG 723 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 CAGAGGCTAACACAAAAGCAAGGCTGACTTGTCTTGCGGGATCATCATTGAATTGAGCTA 783 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 AGGAAAGCAGAAATGAAGCGGACGTGGAGCTAAATTGTTGAATTGAGGCCGTGGTACCAA 843 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 TTTTGTACTCTTTAGTTTTTAGTCTAGTCTCTATAACATATTTGTGTTGGAGAAACAAAC 903 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 CGAGGAGCTCGATGTATGGGACATGTATGATAGCCATAAGTTATGCATCACCATAGTCTG 963 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 GCTTGAGGGCCTAAACTGCTTAATGTTTATGCAAGCGCATGGTTCTATTGTATCACCAGT 1023 consensus_9561#1 ------------------------------------------------------------ consensus_9561#2 ------------------------------------------------------------ consensus_9561#0 T 1024 consensus_9561#1 - consensus_9561#2 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||