These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1134 fasta sequence [CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCAGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060356 [CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCAGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAAC ] [+] EMBL AK059622 [ GTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCGGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTT ] [+] EMBL AU096192 [ GACCTGGTGGNGATGGCGCTGCTCTTNTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCNTCCTCGGCGAGCGCGGCAACGCGCACNTGAGGTGGGCCAAGGTGTGCGACGTNTACGGGCCCTTNTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096169 [ TTNTGCGAGCGCGCCATGGCCNCCGTCGTCGTCGCCCTCATCGCCG CTTCGCCGACCTCGTCCTCCTCATGCTCNCCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCCCCGTGAGATGATNCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATNCAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 294 fasta sequence [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCACAATGGAGTCGTCGCGGGGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNCCTTTTC-GGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGCGACGACGGTGGACCCGTGCTGCGTGGTTCTG] [+] EMBL OSS12339A [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCACAATGGAGTCGTCGCGGGGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNCCTTTTC GGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGCGACGACGGTGGACCCGTGCTGCGTGGTTCTG] [+] EMBL OSS12386A [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGNAGG TGGCAACCGCTGACCGCACCG GCGNCANAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGNCGNCCCTTTCTGTACTACAGCAGCCGNCGGGGCTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9564#0 CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGT 60 consensus_9564#1 ----------------------------------GTAGCAGTAGTACGTAGCCAGCCAGT 26 ************************** consensus_9564#0 AGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCC 120 consensus_9564#1 AGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCC 86 ************************************************************ consensus_9564#0 CGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGG 180 consensus_9564#1 CGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCA-CAATGGAGTCGTCGCGG 145 ********* ** *************************** ***************** consensus_9564#0 GGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGC 240 consensus_9564#1 GGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNC--CTTTTCGGACTACAGCAGCCGC 203 ************** ******************* * * * *************** consensus_9564#0 CGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTT-GGCCGCTGGTTCCAGGGC 299 consensus_9564#1 CGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGC 263 ************************* **** **** **** ** ** ************ consensus_9564#0 GCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGC 359 consensus_9564#1 GACGACGGTGGACCCGTGCTGCGTGGTTCTG----------------------------- 294 * ** ************************** consensus_9564#0 GTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGA 419 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 GGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTT 479 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 CGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGC 539 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 GGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCT 599 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 GCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGC 659 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 GCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGC 719 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 CGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCAT 779 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 CCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGG 839 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 TCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGT 899 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 CAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGC 959 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 TTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTAT 1019 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 TAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAA 1079 consensus_9564#1 ------------------------------------------------------------ consensus_9564#0 TACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1134 consensus_9564#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||