These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1426 fasta sequence [TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT-CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCATCGT--AGCCGGA--GGCGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGCTCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCGTCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAACGGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTCGACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGTTCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA] [+] EMBL AK106300 [TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCATCGT AGCCGGA GGCGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGCTCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCGTCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAACGGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTCGACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGTTCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCC ] [+] EMBL CA753774 [ CTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACNACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACCAGTACGACGACNACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCNACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACCACCCCTACNACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCNACGGCGGCGGCTACGGCGGCTCTACCTACGGCNACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCCTCGTTAACCCGAAAGGGGGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGG ] [+] EMBL C25923 [ CTACTGTCG GCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCTACGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGTTCGCCGTGGACGACGTNCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGG ] [+] EMBL OSR3133A [ GACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGNACGAGCTGGCAGCGGCAACGGCCGTTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCNACGACGACAACCGCAGCGGCA CGNCAGCNACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGANGAGC ] [+] EMBL AU184611 [ CTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA] consensusID : consensus_9571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CCGCCAAATAATTTGTGGNAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACATATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA] [+] EMBL AU100652 [CCGCCAAATAATTTGTGGNAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACATATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9571#0 TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGG 60 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 ACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAG 120 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 AAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCTCG 180 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGC 240 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGC 300 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 GGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAG 360 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 AGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGC 420 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 GAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGC 480 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 AGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTAC 540 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 GGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCT 600 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCCTATGGTAACGGCGGCGCCATCGTAGCCGGAGGCGGCGGCGGCAGCGCCCCTGCCTCC 660 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGC 720 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCG 780 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAAC 840 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 GGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTC 900 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 GACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGT 960 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATG 1020 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 CATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGT 1080 consensus_9571#1 ------------------------------------------------------------ consensus_9571#0 TAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAA 1140 consensus_9571#1 ---------------------------------------CCGCCAAATAATTTGTGGNAA 21 ****************** ** consensus_9571#0 TGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAAC 1200 consensus_9571#1 TGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAAC 81 ********************************** ************************* consensus_9571#0 CAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTAT 1260 consensus_9571#1 CAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTAT 141 ************************************************************ consensus_9571#0 ATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGAC 1320 consensus_9571#1 ATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGAC 201 ************************************************************ consensus_9571#0 TGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGG 1380 consensus_9571#1 TGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGG 261 ********************************************* ************** consensus_9571#0 CTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA-------------- 1426 consensus_9571#1 CTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACA 321 ************************** ***** * ** consensus_9571#0 -------------------------------------------- consensus_9571#1 TATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA 365 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||