These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1733 fasta sequence [CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGATTCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGCGAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTCCCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTGCGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGCCGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG-ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT-CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA] [+] EMBL AK070826 [CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGATTCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGCGAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTCCCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTGCGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGCCGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTA ] [+] EMBL AU101003 [ CCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTT ] [+] EMBL CA997912 [ AGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTA ] [-] EMBL CB965012 [ CTCCATAT GTCGTACAAGCAAGTGTACCTTGAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCTAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCA CCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACCAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATT ] [+] EMBL C97770 [ CACCCCCCGGAGNAGCCTCGGTTGACAACAGCTCTTCTGANAGTTGGAAACAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGANCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA] consensusID : consensus_9578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CGTTGGCACAAACGCCGAGCACATTGTCCTTCCATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGGGTAAGGAGTGCTGCGGGCTCTCGCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGACAAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAAAA] [-] EMBL CA759208 [CGTTGGCACAAACGCCGAGCACATTGTCCTTCCATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGGGTAAGGAGTGCTGCGGGCTCTCGCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGACAAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9578#0 CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGAT 60 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGC 120 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTC 180 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTG 240 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGC 300 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCC 360 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGG 420 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAA 480 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCC 540 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGA 600 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 CAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAAC 660 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 ACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACC 720 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 ACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAA 780 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 ATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCC 840 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGAC 900 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 TGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTT 960 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGC 1020 consensus_9578#1 ------------------------------------------------------------ consensus_9578#0 GTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCC-AGCAGAATCTCATTG 1079 consensus_9578#1 ----------------------------CGTTGGCACAAACGCCGAGCACATTGTCCTTC 32 ** * **** *** **** * * ** ** consensus_9578#0 CATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTC 1139 consensus_9578#1 CATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGG-GTAAGGAGTGCTGCGGGCTCTC 91 ***** ** * *** * ** * *** *** * ******* * ** ** *** consensus_9578#0 CGGAGTTCCAAGAGCCAGAGAGCAACAGCAGC-AGCACCAGTTC-CTCCATATGGTCGAC 1197 consensus_9578#1 GCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGAC 151 * ******** *** *** * * ** *** * **** **** ********* consensus_9578#0 AAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGA 1257 consensus_9578#1 AAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGA 211 ********** ******* ***************************************** consensus_9578#0 CAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTAT 1317 consensus_9578#1 CAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTAT 271 ******************************************************* **** consensus_9578#0 AGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAG 1377 consensus_9578#1 AGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCC-GGAG 330 ******************************************************* **** consensus_9578#0 GAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGAC 1437 consensus_9578#1 GAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGAC 390 ******************************* **************************** consensus_9578#0 CTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGG 1497 consensus_9578#1 CTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGG 450 ************************************************************ consensus_9578#0 TTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTA 1557 consensus_9578#1 TTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTA 510 ************************************************************ consensus_9578#0 GCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTAT 1617 consensus_9578#1 GCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTAT 570 ************************************************************ consensus_9578#0 TCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATG 1677 consensus_9578#1 TCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATG 630 ************************************************************ consensus_9578#0 TGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA---- 1733 consensus_9578#1 TGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAA 690 ******************************************************** consensus_9578#0 -- consensus_9578#1 AA 692 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||