These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1366 fasta sequence [TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG-CGAC-TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC-AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA] [+] EMBL AK105971 [TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG CGAC TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG ] [+] EMBL OSS0751A [ TGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTAGCCGCGGCGGC GCGGACGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCC ] [+] EMBL CB677094 [ ACGATGCTGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG ] [+] EMBL AU222769 [ GGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCNAGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAA ] [+] EMBL AU101314 [ CAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAATGGAGCTGCACAACAGATTATGCAAAAA] consensusID : consensus_9582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA] [+] EMBL OSC276 [ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9582#0 TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGC 60 consensus_9582#1 --------------------------------------------------ACCAAAGAGC 10 * * **** consensus_9582#0 ATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTC 120 consensus_9582#1 AGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAAT----- 65 * * ** * *** * ** * ** * ** *** consensus_9582#0 GCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCA 180 consensus_9582#1 -CCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTG---------ATTGTCTCGCTC 115 *** *** **** * * * * ** * * * * consensus_9582#0 AGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 240 consensus_9582#1 ATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 175 * * ** * *********************************************** consensus_9582#0 GATGCTGTCGCCGCGGCGGCGGCGGCGA--CTTTTGAGAAGCCGAGGACGGTGGTGAAGA 298 consensus_9582#1 GATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGA 235 ********************** * ** ***************************** consensus_9582#0 AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 358 consensus_9582#1 AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 295 ************************************************************ consensus_9582#0 GGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCT-CGATG-AATTCTCTGTTT-CCA 415 consensus_9582#1 GGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCA 355 **************************** ******** ***** ************ *** consensus_9582#0 AGCCTGCTGGA--TTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCT 473 consensus_9582#1 AGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTT 415 ***** ** * *************** ***** ****************** * consensus_9582#0 CGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGA 533 consensus_9582#1 TGAA-------------------------------------------------------- 419 *** consensus_9582#0 TGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGG 593 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 TGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCC 653 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGT 713 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGAC 773 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGC 833 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 CTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTC 893 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAA 953 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 TAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGT 1013 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGA 1073 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 TTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATT 1133 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 TCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAA 1193 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 CATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCAGTAATAATAAATAGGTTT 1253 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 ATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAAT 1313 consensus_9582#1 ------------------------------------------------------------ consensus_9582#0 GGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA 1366 consensus_9582#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||