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Oryza sativa
cluster # 9582 cluster # 9582       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9582#0 length = 1366 sequences # 5  
consensus_9582#1 length = 419 sequences # 1  

consensusID : consensus_9582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1366
fasta sequence
                              [TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG-CGAC-TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC-AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA]

[+] EMBL AK105971             [TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG CGAC TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG                                         ]
[+] EMBL OSS0751A             [                                              TGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTAGCCGCGGCGGC GCGGACGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB677094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGATGCTGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG                                         ]
[+] EMBL AU222769             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCNAGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAA                       ]
[+] EMBL AU101314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAATGGAGCTGCACAACAGATTATGCAAAAA]


>consensus_9582#0 TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGC ATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTC GCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCA AGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG GATGCTGTCGCCGCGGCGGCGGCGGCGACTTTTGAGAAGCCGAGGACGGTGGTGAAGAAG CTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGG TACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCT GCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGG GCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAG TGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAG AAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTAC CAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATC ATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTAC ATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAAC GCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCG ACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCC GGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAG CATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTAC TATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCAT CCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATG CTGTTTTTAGGCATATTAGTATATCATTTGATTCAGTAATAATAAATAGGTTTATTGTCA TAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTA ATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA



consensusID : consensus_9582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence
                              [ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA]

[+] EMBL OSC276               [ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA]


>consensus_9582#1 ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATC CAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTT GCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGC TGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTC CTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTAC GAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCT TCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9582#0      TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGC 60
consensus_9582#1      --------------------------------------------------ACCAAAGAGC 10
                                                                          * * ****

consensus_9582#0      ATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTC 120
consensus_9582#1      AGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAAT----- 65
                      *  *           ** *   ***   *  **   * ** * **   ***         

consensus_9582#0      GCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCA 180
consensus_9582#1      -CCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTG---------ATTGTCTCGCTC 115
                       ***    *** ****  *  * *   * **  *  *           *      *    

consensus_9582#0      AGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 240
consensus_9582#1      ATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 175
                      *  *  **  *  ***********************************************

consensus_9582#0      GATGCTGTCGCCGCGGCGGCGGCGGCGA--CTTTTGAGAAGCCGAGGACGGTGGTGAAGA 298
consensus_9582#1      GATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGA 235
                      ********************** * **    *****************************

consensus_9582#0      AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 358
consensus_9582#1      AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 295
                      ************************************************************

consensus_9582#0      GGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCT-CGATG-AATTCTCTGTTT-CCA 415
consensus_9582#1      GGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCA 355
                      **************************** ******** ***** ************ ***

consensus_9582#0      AGCCTGCTGGA--TTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCT 473
consensus_9582#1      AGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTT 415
                      ***** ** *   ***************      ***** ****************** *

consensus_9582#0      CGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGA 533
consensus_9582#1      TGAA-------------------------------------------------------- 419
                       ***                                                        

consensus_9582#0      TGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGG 593
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      TGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCC 653
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGT 713
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGAC 773
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGC 833
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      CTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTC 893
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAA 953
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      TAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGT 1013
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGA 1073
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      TTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATT 1133
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      TCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAA 1193
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      CATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCAGTAATAATAAATAGGTTT 1253
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      ATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAAT 1313
consensus_9582#1      ------------------------------------------------------------
                                                                                  

consensus_9582#0      GGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA 1366
consensus_9582#1      -----------------------------------------------------
                                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)