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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence
[GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA-CCATGG-CGGCATCTATGGCGGCGGCGACAG--AAGGACA-CGGCGGTGCACTTCGACG-NCCACGCCC-TCGG-CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT-CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT-CAGCCGATCAATTAGTAGGCGCCATAATTGCATG-CAAGCATGCTGCTACGNATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA]
[+] EMBL AU101387 [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAG AAGGACA CGGCGGTGCACTTCGACG NCCACGNCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGNCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTTCATG CAAGCATGCTGCTACGNATAAATGTACGna ]
[+] EMBL C73778 [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAN AAGGACA CGGCGGTGCACTTCGACG NCCACGGCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGNCATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGNGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGNCATAATTGCATG CAAGCATGCTGCTACGNt ]
[+] EMBL C99577 [ gtacCCCCCTTACAC CCNTGGCCGGCATCTTTGGCCNCCGCGACAGCCAAGGACACCGGCGTTGCAC TCGACG CCCACGCCC TCGGCCAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAANC ATTCTAGCTACAAACCTGGACATNTGCGTGTCTAGATTCCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGATCCAGCCGATCAATTAGTAGGCGCCATAATTGCATGCCAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA]
[+] EMBL C99637 [ CTCCGTACAACCCATGG CGGCATCTATGGCGGCGGCGACAGC AAGGACA CGGCGGTGCACTTCGACGCCCCACGCCCNTCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTGCATG CAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGT CAAGTTTT CAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATNTNGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGANATTGANGNTAA ]
consensusID : consensus_9584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG]
[+] EMBL CB643957 [AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG]
consensusID : consensus_9584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA]
[+] EMBL BI806391 [GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9584#0 GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGC 60
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 -----------------------------AGCTCCTTCTTTCGTCTTCGTCTTCGCCATC 31
consensus_9584#0 CGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAACC 120
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 GTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCT--CTCTCGGTCGTCGTCG-GCGGCA 88
consensus_9584#0 ATGGCGGCATCTATGGCGGCGGCGACAGAAGGACACGGCGGTGCACTTCGACGNCCACGC 180
consensus_9584#2 ----------------------------------------GTGCACTTCGACGCCCACGC 20
consensus_9584#1 ATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGC 148
* * * * * * ***
consensus_9584#0 CCTCGGCAACTGGT-GCTAGCA-GC-TACCCCTCCGTAAAAAAAAAAAACAATTCT-AGC 236
consensus_9584#2 CCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACA------TTCT-AGC 73
consensus_9584#1 G--AGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAAC 206
* * * * ** ** * *** * * * * * * *
consensus_9584#0 TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 291
consensus_9584#2 TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 128
consensus_9584#1 CACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAG 266
*** * ** * ** ** ** * * * * ** ** ** *
consensus_9584#0 GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCACCCCAAATTAGGCGCAACGAGA 349
consensus_9584#2 GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCCCCCCCAATTAGGCGCAACGAGA 186
consensus_9584#1 AGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGG 326
** * * * * * *** ** * ** * * ** * ** * * ***
consensus_9584#0 --------CCGACGGCGAGCGATGAGCCATAGCAATGATCAGCCGATCAATTAGTAGGCG 401
consensus_9584#2 --------CCGACGGCGAGCGATGA-CCATA-CAATGATCAGCCGATCCATTAGTAGGCN 236
consensus_9584#1 GGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATC--TCCATTCCATGCTAGGAA 384
* ** * ** ** * ** *** * ** * ****
consensus_9584#0 CCATAATTGCATGCAAGCATGCTGCTACGNATAAAT-GTACGTATAC-TACGGGTCCAAG 459
consensus_9584#2 CCATAATTGCATGCAAGCATGCTGCTACGTATAAAT-GTACGTATACCTACGGGTC-AAG 294
consensus_9584#1 ACA-AGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAAC 443
** * * * * * * * * * * *** * * * * **
consensus_9584#0 TTTTCCAACGTGTATACGCGCGTGTGAATTAATTAA------GTCGGCGCGTACGTAATT 513
consensus_9584#2 TTTTC-AACGTGTATACGCGCGTGTGAATTAATTAA------GTAGTCGCGTACGTAATT 347
consensus_9584#1 TTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCAC 503
** * *** ** * * ** * * * ** *
consensus_9584#0 AAGATCATAGCTGATGTTTGGTGAGAGG-TTTTTGGGTTGTCAAAAGATTTTTTTTTTTT 572
consensus_9584#2 AAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTT 407
consensus_9584#1 AAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGC 563
*** * ** ** ** * * ** * * * **
consensus_9584#0 TTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 632
consensus_9584#2 T-GGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 466
consensus_9584#1 GACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAG--CCGCCGCCGGAGAGCTAT-GAT 620
* ** * * * * ** * * * ** ***** *** ***
consensus_9584#0 GGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 691
consensus_9584#2 GGATCGG-CATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 524
consensus_9584#1 GG--CAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTG 678
** * * * ** * * * * * * ** *** * * * **
consensus_9584#0 TAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAA 751
consensus_9584#2 TCAAAAAAAAAA------------------------------------------------ 536
consensus_9584#1 TCGTCGCTGTC-CGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGC 737
*
consensus_9584#0 ATATATATATAGACATTGATGCTAAAAAA 780
consensus_9584#2 -----------------------------
consensus_9584#1 GAGCGCGCTGCTGCACTGCGG-------- 758
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||