These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence [GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCTCTCCCTACTGGTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTCTCTCAGCTCAT] [+] EMBL CB622929 [GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTCTATTATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCT ] [+] EMBL CB626984 [ CAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAAGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAAAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAACTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATATCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCTCTCCCTACTGGTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTCTCTCAGCTCAT] [+] EMBL CB626965 [ CAGTGTAATTCTTTGTTAAAACATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCT ] consensusID : consensus_9593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence [TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG-ATGTATCTTCACTTCACTTTGGGAACTCATTCCAT] [-] EMBL AU108570 [TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATNGACCCCCAAGTCTGTTTTCATGAATGTAACTTCACTTCACTTTGGGAACTCATTCCAT] [+] EMBL CB681018 [ cTAAAAAAAAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACCGACTGTACATATGGAGTGGGTGAAGTGGGAACTACATACATGCACTAAAAAAGGGATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGGATTTAAAATCTTTTTTACTCTTCCGTTTCCTGGATACTTGAATAAATAATCAACTGGAGATGCAAATCTCAAACGAAAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGGTAATCTAAGAAAATTATCTGGGGGCTGTCCCTGTCCATTACCAGGGTAATTCTTTGTTAAAAAAATTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAAACAATAATATCACATCCTCTTCATAACAAATCAGCGGCATTTAATCCTTTGCATTCTTTTGCACAAACAGCCTGGAAGGGGATTTGCGTAAAAATACTCCTCTTGCCTAGGACTTCCACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG ATGTATCTTCAC ] [-] EMBL CB681017 [ AAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG AT AATGTTCACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9593#0 GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCA-TTACCAGT 59 consensus_9593#1 --TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTAC 58 * ** * * **** ** ** * * ** ** consensus_9593#0 GTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTG 119 consensus_9593#1 ATCCTGCTCTCTCTATATACATCATACATGCCTATCTG-AATAAAGCTGCAATTTTGGGA 117 * * ** * * * * * * ** **** ** * * * * * * consensus_9593#0 GAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCT 179 consensus_9593#1 TGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGA---- 173 * * ** * ** ** * *** ** * **** * * * * * * * consensus_9593#0 TTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCT 239 consensus_9593#1 -------ACTACATACATGCACT---AAAAAAGGTATTCTTTCAAGCTATCCCATCACTT 223 * * *** **** ** * * * * * *** *** * * * consensus_9593#0 TGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTT 299 consensus_9593#1 CTGGCA-----CATCTATGCTTTGC--TGGTATTTAAAATCTTTTTTACTCTTCCGTTTC 276 * * ** ** ** ** *** ** *** **** * * * * consensus_9593#0 CACTTCACTTTGGAACTCATTCCA-TGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTC 358 consensus_9593#1 CTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACC 336 * * **** * * ** * ** ** * * * * * * **** * consensus_9593#0 CCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGAC 418 consensus_9593#1 TGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAAT 396 * * * * * * * *** * * * ** ***** * consensus_9593#0 CCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGG 478 consensus_9593#1 TATCTGTGGGCTGTCCC---TGTCCATTACCAGTGTA-------ATTCTTTGTTAGAAGA 446 * * * * ** * ***** * ** ** * ** ** * consensus_9593#0 CTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCAT 538 consensus_9593#1 TTTTGTGTTTGT-----ATATCCATGCTACATCAGGGAAGT------GGTTGGAACT--- 492 * * * ** * * * ** * * ** ** * **** consensus_9593#0 CTACCGTTGCCAGACTATAATGT-GTATATATGTTTGGATATTCAGCCTTTAATGAATCC 597 consensus_9593#1 ------TTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCC 546 ** **** ***** * ** * * * * * * * ***** consensus_9593#0 ATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAG 657 consensus_9593#1 TTTGCAT-TCTTTTGCACAAGCAGCCTGGAAGGGGATTTG-CGTAGAAGTACTCCTCTTG 604 * ** ** * * **** * ** * * * * * * consensus_9593#0 CCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGT 717 consensus_9593#1 CCTAGGACTTCGACCAGATAACCT--CTGATATGGACCCCCAAGTCTGTTTTCATGATGT 662 ** * *** ** * * * ** * * *** * * * * * * * ** ** consensus_9593#0 CTCCTCTCCCTACTG-GTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTC 776 consensus_9593#1 ATCTTCACTTCACTTTGGGAACTCATTCCAT----------------------------- 693 ** ** * *** * ** ** *** * consensus_9593#0 TCTCAGCTCAT 787 consensus_9593#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||