These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1341 fasta sequence [CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTGTCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTATGAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAGTGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCTGCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGGCTCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGCTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGCGGCACCGCCATCCGGGAGTGGGCCCGCGGGGAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAAC------ATCACCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAACTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG] [+] EMBL AU172641 [CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTGTCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTATGAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAGTGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCTGCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGG ] [+] EMBL AK068009 [ GCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGCTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGCGGCACCGCCATCCGGGAGTGGGCCCGCGGGGAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAAC ATCACCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAACTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG] [+] EMBL CA764480 [ CGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTTACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAACATCTTAATCACCCAAGAGGAAGTAATTTT ] consensusID : consensus_9603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GACCCGGCCCGGNTTCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCCGCGGGAAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGCTGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAACAAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCTAGTTACGAGCCCTTAAAAAAAAAAAAAAA] [+] EMBL AU164487 [GACCCGGCCCGGNTTCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCCGCGGGAAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGCTGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAACAAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCTAGTTACGAGCCCTTAAAAAAAAAAAAAAA] consensusID : consensus_9603#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GCCCATGTGTACTGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAATCACAGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAATTTGGCACCTAAAATCTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAACCACCAATTCATCTCCATTTCTTGCACATACCATTGATCCTTTCATTTACAGGACATCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC] [+] EMBL BI797098 [GCCCATGTGTACTGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAATCACAGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAATTTGGCACCTAAAATCTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAACCACCAATTCATCTCCATTTCTTGCACATACCATTGATCCTTTCATTTACAGGACATCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC] consensusID : consensus_9603#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [CGGCGGCGTCCACCACCGGCGCTTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGNTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGGGCACCGCATCCGGNAGTNGGCCCGCGGGGAGCGCCTTTACGACCAGATGGTGNGNCGCGCGGCNCCGCGGCGGAAGTTGCGGGGAGATCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG] [+] EMBL OSR00451A [CGGCGGCGTCCACCACCGGCGCTTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGNTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGGGCACCGCATCCGGNAGTNGGCCCGCGGGGAGCGCCTTTACGACCAGATGGTGNGNCGCGCGGCNCCGCGGCGGAAGTTGCGGGGAGATCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTG 60 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTAT 120 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 GAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAG 180 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCT 240 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 GCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCT 300 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGG 360 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 ACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGGC 420 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCG 480 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ----------------------------------------------GACCCGGCCCGGNT 14 consensus_9603#3 --------------------------------------------------CGGC--GGCG 8 consensus_9603#0 GCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGC- 539 consensus_9603#2 ------------------------------------------------GCCCATGTGTAC 12 * * consensus_9603#1 TCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCC 74 consensus_9603#3 TCCACCACCGGCGCTT--CCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGG------C 60 consensus_9603#0 TCCGGCGTCGGC-CTCGTCCCCTGCGCCGTCGGCG-GCACCGCCATCCGGGAGTGGGCCC 597 consensus_9603#2 TGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAAT----CAC 68 * * * ** ** * consensus_9603#1 GCGGGAAGCGCCTCTACGACCAGAT-GGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGG 133 consensus_9603#3 GCGGGA-GCGC-TCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGA 118 consensus_9603#0 GCGGGGAGCGCCTCTACGACCAGAT-GGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGG 656 consensus_9603#2 AGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGG 128 * * * * * * * consensus_9603#1 GAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCC-GCCAC 192 consensus_9603#3 TGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGC-CCGGNTCCGGCGTC-GGCCT 176 consensus_9603#0 GAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCC-GCCAC 715 consensus_9603#2 AGGAGTCCTGTCAGGT-GAAATAATCTGTTTAACTCTG----GAATTTGGCACCTAAAAT 183 * * * * * * * * * * * * consensus_9603#1 GGCCGCGTACGCCG-------GGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATC 245 consensus_9603#3 CGTCCCCTGCGCCGTCG----GGGCACCGCATCCGGNAGTNGGC--CCGCGGGGAGCGCC 230 consensus_9603#0 GGCCGCGTACGCCG-------GGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATC 768 consensus_9603#2 CTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAAC 243 * * * * * * * * * * * consensus_9603#1 TTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACA 305 consensus_9603#3 TTT--ACGACCAGATGGTGNGNCGCGCGG-----CNCCGCGGC-GGAAGTTGCGGGGAGA 282 consensus_9603#0 TTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACA 828 consensus_9603#2 CAC---CAATTCATCTCCATTTCTTGCACAT-ACCATTGATCCTTTCATTTACAGG-ACA 298 * * * * * * * * * consensus_9603#1 TTGAAAAAGTG-AGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGAC 364 consensus_9603#3 TCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG---------------------- 320 consensus_9603#0 TTGAAAAAGTG-AGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGAC 887 consensus_9603#2 TCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC----- 353 * * * * * * consensus_9603#1 GCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAG 424 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 GCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAG 947 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 CTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAG 484 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 CTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAG 1007 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 GAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGC 544 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 GAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTC 1067 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 TGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAAC 604 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAA 1127 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 AAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCT 664 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 CCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACA 1187 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 AGTTACGAGCCCTTAAAAAAAAAAAAAAA------------------------------- 693 consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 TCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAACATCA 1247 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ------------------------------------------------------------ consensus_9603#3 ------------------------------------------------------------ consensus_9603#0 CCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAA 1307 consensus_9603#2 ------------------------------------------------------------ consensus_9603#1 ---------------------------------- consensus_9603#3 ---------------------------------- consensus_9603#0 CTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG 1341 consensus_9603#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||