These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1515 fasta sequence [TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAATTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTC-TGCGGCACGCTTACGCTCGCCGACG-T-CTGCCGCGCCCGCGGCCTCGTG-CTCATCAACT-ACGCCACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGC-TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTGATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAAAGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAATATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGGAGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGCTGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCAAGCCAAATCAGAAGACGTCCAAGGCTTGA-CAAATGGAA-CGGTCTG-CA-CA-CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG-CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA-CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA-CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC-ATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGAT-GGTAAAAAAAAAA] [+] EMBL BE040761 [TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAATTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCG ACCGAGACCATCCGCGCCAACGTC TGCGGCACGCTTACGCTCGCCGACG T CTGCCGCGCCCGCGGCCTCGTGCCTCAT AACT ACGCCACGGGCTGCATCTTC AGTACGACGCCGGCCACCAGCTTCGG ACAGGGATCGGGGTCAAGGAGGAGGACACGCCCAAC NCGTCGGg ] [+] EMBL AK071766 [ cccagacAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGTCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGACCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTC TGCGGCACGCTTACGCTCGCCGACG T CTGCCGCGCCCGCGGCCTCGTG CTCATCAACT ACGCCACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGC TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTGATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAAAGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAATATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGGAGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGCTGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCAAGCCAAATCAGAAGACGTCCAAGGCTTGA CAAATGGAA CGGTCTG CA CA CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC ATGTAATGTAATACATTGAATTCTCAGCTAATATA ] [-] EMBL OSS14237A [ CCAACGTCGACT GTTCGAGACCCACCGNACCGAGACCATCCGCGCCAACGTCTTGCGGC NACTTACGCTCGCCGACGNTACT NGCG CCGCGGCCTCGTG CTCATCAACTNAC CCACGGGCTGCATCTTCGAGTACGACGCNGGCCACCAGC TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATAGATACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCA ] [+] EMBL BM419622 [ GTCC AGGCTTGACCAAATGGAACCGGTCTGCCACCACCAATGTTGTTGTTATTTATNCCATATAAATTGACATTTCTCT CCTGGTGACAATCAATAAGCATGCCATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAACCAGATAGGTTTCTCATAGGAAGTCATACCCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATACCCGTGGGAAATGGGTAAGGTTGGAGATTCCTCTGTTTGTATCTTAC ATGGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC ATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGATGGGTAAAAAAAAAA] [+] EMBL AU166261 [ A CAAATGGAA CGGTCTG CA CA CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAACTATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGAT AGTAACAAAAA ] consensusID : consensus_9607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CTGNGTACGCGTGGGCGGCGATGGATCATGGTGGATCACGCCAGGTGCTGCAGGGCCGCACCACACCGCTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCGCCACCCGCGCGCACATCGGTGACAGCATCAGCTCACCTCGGTAGCTATTAAAATCCATCCCCCTTCTCCACCTCACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC] [+] EMBL OSC100131 [CTGNGTACGCGTGGGCGGCGATGGATCATGGTGGATCACGCCAGGTGCTGCAGGGCCGCACCACACCGCTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCGCCACCCGCGCGCACATCGGTGACAGCATCAGCTCACCTCGGTAGCTATTAAAATCCATCCCCCTTCTCCACCTCACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9607#0 TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAA 60 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATC 120 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCA 180 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 CCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACA 240 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 AGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCG 300 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 CGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGG 360 consensus_9607#1 -------------------------------------------------CTGNGTACGCG 11 * * * consensus_9607#0 CCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGT-CACCG-GCCG 418 consensus_9607#1 TGGGCGGCGATG-GATCATGGTGGATCACG--CCAGGTGCTGCAGGGCCGCACCACACCG 68 * * *** * * ** * **** *** ** *** **** *** consensus_9607#0 CCCCAACGTCGAC--TGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTCTGC 476 consensus_9607#1 CTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCG---CCACCCGCGCGCACATCGGT 125 * ** **** * ***** ** * **** *** *** ****** ** ** * consensus_9607#0 GGCACGCTTACGCTCGCCGACGTCTGCCGCGCCCGCGGCCTCGTGCTCATCAACTACGCC 536 consensus_9607#1 GACA-GCATCAGCTCACC----TCGGTAGCTATTAAAATC-CATCCCCCTTCTCCACCTC 179 * ** ** * **** ** ** * ** * * * * * * * ** * consensus_9607#0 ACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGCTCGGCA--CAGGGATCGGGTTCA 594 consensus_9607#1 ACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTC 239 ** ** * ** * * ** *** * * ** ** consensus_9607#0 AGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTG 654 consensus_9607#1 CCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC--------------------------- 272 * * ** * ***** *** consensus_9607#0 AGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCAT 714 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 CCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTG 774 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 ATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAA 834 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 AGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAA 894 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGG 954 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 AGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGC 1014 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCA 1074 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 AGCCAAATCAGAAGACGTCCAAGGCTTGACAAATGGAACGGTCTGCACACAATGTTGTTG 1134 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATGCATGA 1194 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCAT 1254 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 ACCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTT 1314 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 GTATGTCTTCTGGATCGTATGAATACCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGT 1374 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCT 1434 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TTGGACTTTCCTTCATGTAACATGTAATGTAATACATTGAATTCTCAGCTAATATATTGA 1494 consensus_9607#1 ------------------------------------------------------------ consensus_9607#0 TATTTGATGGTAAAAAAAAAA 1515 consensus_9607#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||