These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 830 fasta sequence [TTTTTTTTTTTTTTTT---TG-ACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT] [-] EMBL AU166382 [TTTTTTTTTTTTTTTTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTNTATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAANAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGNGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCANATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGNGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAA ] [+] EMBL CB667904 [ tcTTTTTTTT TG ACAAAACTGCTCATGTTTTATAAGACGAACCTCAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGATAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT] [+] EMBL CB663983 [ GCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCACATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCC ] [-] EMBL CA998316 [ GTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTG ] consensusID : consensus_9611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA] [-] EMBL BI810442 [TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA] consensusID : consensus_9611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC] [-] EMBL BM422063 [TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9611#0 TTTTTTTTTTT------TTTTTTGACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 54 consensus_9611#1 TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 60 consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 114 consensus_9611#1 ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 120 consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 174 consensus_9611#1 GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 180 consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 234 consensus_9611#1 AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 240 consensus_9611#2 -----------------------------------------------------------T 1 consensus_9611#0 CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 294 consensus_9611#1 CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 300 consensus_9611#2 TTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACG 61 *** ** *** * * * * * * *** * * * consensus_9611#0 GTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 350 consensus_9611#1 GTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 356 consensus_9611#2 CTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCAT 121 ** * * * ** ** * * * * * * ***** * *** * *** consensus_9611#0 ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 406 consensus_9611#1 ATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTG-TCTAACTGC 415 consensus_9611#2 ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 177 *** ******* ************* ********************** ********* consensus_9611#0 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 465 consensus_9611#1 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCC-ATTTGACCATCATTCTCAAAGTGG 474 consensus_9611#2 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 236 *********************************** ******************** *** consensus_9611#0 TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 521 consensus_9611#1 TGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTG-ATGTCGTTATCATCCC 533 consensus_9611#2 TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 292 ** *************** ********** * ****** **************** consensus_9611#0 ATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAA 581 consensus_9611#1 ATTCATGTAGAGTAGA-------------------------------------------- 549 consensus_9611#2 ATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCA 352 **************** consensus_9611#0 CGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGT 641 consensus_9611#1 ------------------------------------------------------------ consensus_9611#2 ACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC---------------------- 390 consensus_9611#0 TGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTG 701 consensus_9611#1 ------------------------------------------------------------ consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 GGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCT 761 consensus_9611#1 ------------------------------------------------------------ consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 GCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGC 821 consensus_9611#1 ------------------------------------------------------------ consensus_9611#2 ------------------------------------------------------------ consensus_9611#0 GCTGCTGCT 830 consensus_9611#1 --------- consensus_9611#2 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||