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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1417 fasta sequence
[CTGCATCCCCCACCCGAACCGAATTCCCGCAAGAGCACGAGGCATCGC-GGCGGCGGCGGCGGCGGCGGCGGCATCTCCGTCGATCTCCGGCGAACACTTGTGCGCAGTCGATAGGGGTTCATCCTGTCCTGTCCGGGGTGAGGCGGGGCGCCGGTGAACCACGAGGCCGACGACGGTCCTCCATCTACACCTCTGCCGTCGCCGGCGAGCTTCGCGATGGGATACAACCGGAGACGCGGCCGTGGATCCTCCTCCTCCTCGTCGTCGCGCCGCACCAAGCAGGAAGCCGCGTGGGATGATGGTCCCGGGACATCACTTCCAAGGCAGGAAGACACTGAAGAAGAACCAAAAGGTCCAAAAATTCAGCTTGCTATGTGGGACTTTGGCCAATGTGATGTTAAAAGATGCACTGGTCGTAAGCTTTCAAGATTTGGGCTATTAAAGGAGTTGCGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGCCCTGTTGGAACACAGTGTGTTTCCAAGGAAGATCGTCATATCGTGCAAAGAAAAGGACTTGCTGTTGTTGATTGTTCGTGGGCGCGATTAAGTGATGTCCCTTTTGTGAAACTCCGTTGTGGCGCTCCTCGTCTCTTGCCATGGTTGGTTGCGGCAAACCCTGTCAATTATGGTCGTCCATGTGAATTGTCTTGTGTGGAAGCTTTATCAGCAGCCCTCATAATATGTGGGGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCTGTAAACGCGGCAGAGAAATCACACCAAAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTTGCCACCTCTAGAGGAAAACCTGAACCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAACAAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCCAAAATAGGATCTTCCGATGTCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCAGAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCAATCTTAAGTACAGACATGAACAAAACGAAATTGCAATGGACAGCAGCTGGTTTAGTCATTGCAATGGACA-GGTTAGATACCTGAAATCACTTTGTATTATTCCAAATTGAGCTATGATCTTACATGTA-TTTTTGATTGATACATAAAACCTGCATTAC]
[+] EMBL AK068949 [CTGCATCCCCCACCCGAACCGAATTCCCGCAAGAGCACGAGGCATCGC GGCGGCGGCGGCGGCGGCGGCGGCATCTCCGTCGATCTCCGGCGAACACTTGTGCGCAGTCGATAGGGGTTCATCCTGTCCTGTCCGGGGTGAGGCGGGGCGCCGGTGAACCACGAGGCCGACGACGGTCCTCCATCTACACCTCTGCCGTCGCCGGCGAGCTTCGCGATGGGATACAACCGGAGACGCGGCCGTGGATCCTCCTCCTCCTCGTCGTCGCGCCGCACCAAGCAGGAAGCCGCGTGGGATGATGGTCCCGGGACATCACTTCCAAGGCAGGAAGACACTGAAGAAGAACCAAAAGGTCCAAAAATTCAGCTTGCTATGTGGGACTTTGGCCAATGTGATGTTAAAAGATGCACTGGTCGTAAGCTTTCAAGATTTGGGCTATTAAAGGAGTTGCGAGTGACCAATGGTTTTGGTGGTGTTGTTCTCAGCCCTGTTGGAACACAGTGTGTTTCCAAGGAAGATCGTCATATCGTGCAAAGAAAAGGACTTGCTGTTGTTGATTGTTCGTGGGCGCGATTAAGTGATGTCCCTTTTGTGAAACTCCGTTGTGGCGCTCCTCGTCTCTTGCCATGGTTGGTTGCGGCAAACCCTGTCAATTATGGTCGTCCATGTGAATTGTCTTGTGTGGAAGCTTTATCAGCAGCCCTCATAATATGTGGGGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCTGTAAACGCGGCAGAGAAATCACACCAAAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTTGCCACCTCTAGAGGAAAACCTGAACCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAACAAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCCAAAATAGGATCTTCCGATGTCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCAGAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCAATCTTAAGTACAGACATGAACAAAACGAAATTGCAATGGACAGCAGCTGGTTTAGTCATTGCAATGGACA GGTTAGATACCTGAAATCACTTTGTATTATTCCAAATTGAGCTATGATCTTACATGTA TTTTTGATTGATACATAACACCTGCATTAC]
[+] EMBL AU166542 [ CCGAATTCCCGCAAGAGCACGAGGCATCGCAGGCGGCGGCGGCGGCGGCGGCGGCATCTCCGTCGATCTCCGGCGAACACTTGTGCGCAGTCGATAGGGGTTCATCCTGTCCTGTCCGGGGTGAGGCGGGGCGCCGGTGAACCACGAGGCCGACGACGGTCCTCCATCTACACCTCTGCCGTCGCCGGCGAGCTTCGCGATGGGATACAACCGGAGACGCGGCCGTGGATCCTCCTCCTCCTCGTCGTCGCGCCGCACCAAGCAGGAAGCCGCGTGGGATGATGGTCCCGGGACATCACTTCC AAGACACTGAAGAAGAACCAAAAGGTCCAAAAATTCAGCTTGCTATGTGGGACTTTGGCCAATGTGATGTTAAAAGATGCACTGGTCG ]
[+] EMBL CA765010 [ nAGTGGGGTCACTCGTTCTTGTCAGTTAACAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAACTCTTGGTTGTCAAGTAACTCTAATGTTCTAAAGTCACCTGTAAACGCGGCAGAGAAATCACACCAAAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTTGCCACCTCTAGAGGAAAACCTGAATCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAACAAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCCAAAATAGGATCTTCCGATGCCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCAGAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCAGTCTTAAGTACAGACATGAAGAAAACAAAATTGCANTGGACAGCAGCTGGTTTAGNCATTGCAATGGACAGGGTTANATACCTGAAATCACTTTGTATTATTCCAAATTGAACTATGATCTTACNTGTATTTTTTGATT ]
[+] EMBL BI808238 [ CTGT AAC CGGCAGAGAAATCAC CC AAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTT CCACCTCTAGAGGAAAACCTGAATCACCTGAACTTTAACC AGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAAC AATGGCGTCAGAAGGGAACATTTGGAGCTGTCCCGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCC AAATAGGATCTTCCGATGTCC ATGAAAAC ATCTTCAATGGTCTTGAGGACAGATCATGGCTCAGAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCAGTCTTAAGTACAGACATGAAGAAAAC AAATTGCAATGGACAGCAGCTGGTTTAGTCATTGCAATGGACA GGTTAGATACCTGAAATCACTTTGTATTATTCC AATTGAGCTATGATCTTACATGTA TTTTTGATTGATACATAAAAaaaaaa ]
[+] EMBL AU166541 [ GGAAAACCTGAACCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAACAAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCCAAAATAGGATCTTCCGATGTCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCAGAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCAATCTTAAGTACAGACATGAACAAAACGAAATTGCAATGGACAGCAGCTGGTTTAGTCATTGCAATGGACA GGTTAGATACCTGAAATCACTTTGTATTATTCCAAATTGAGCTATGATCTTACATGTA TTTTTGATTGATAAAAAAAA ]
consensusID : consensus_9613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence
[CCAAGGATTTCTGAATATGATGGTCAAATGATTNCAACTTTCTCTGTTACTGCATTATGTTTATGAAGACTGGATACTATGTACTGCATATTTATTTTAGATTTGTGTCACCAGATGTTTTCGCACCCTTNTGTTGTTATGATGTGCAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTNCCAAAGTCACCT]
[+] EMBL C74969 [CCAAGGATTTCTGAATATGATGGTCAAATGATTNCAACTTTCTCTGTTACTGCATTATGTTTATGAAGACTGGATACTATGTACTGCATATTTATTTTAGATTTGTGTCACCAGATGTTTTCGCACCCTTNTGTTGTTATGATGTGCAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTNCCAAAGTCACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9613#0 CTGCATCCCCCACCCGAACCGAATTCCCGCAAGAGCACGAGGCATCGCGGCGGCGGCGGC 60
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GGCGGCGGCGGCATCTCCGTCGATCTCCGGCGAACACTTGTGCGCAGTCGATAGGGGTTC 120
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ATCCTGTCCTGTCCGGGGTGAGGCGGGGCGCCGGTGAACCACGAGGCCGACGACGGTCCT 180
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CCATCTACACCTCTGCCGTCGCCGGCGAGCTTCGCGATGGGATACAACCGGAGACGCGGC 240
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CGTGGATCCTCCTCCTCCTCGTCGTCGCGCCGCACCAAGCAGGAAGCCGCGTGGGATGAT 300
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GGTCCCGGGACATCACTTCCAAGGCAGGAAGACACTGAAGAAGAACCAAAAGGTCCAAAA 360
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ATTCAGCTTGCTATGTGGGACTTTGGCCAATGTGATGTTAAAAGATGCACTGGTCGTAAG 420
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CTTTCAAGATTTGGGCTATTAAAGGAGTTGCGAGTGACCAATGGTTTTGGTGGTGTTGTT 480
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CTCAGCCCTGTTGGAACACAGTGTGTTTCCAAGGAAGATCGTCATATCGTGCAAAGAAAA 540
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GGACTTGCTGTTGTTGATTGTTCGTGGGCGCGATTAAGTGATGTCCCTTTTGTGAAACTC 600
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CGTTGTGGCGCTCCTCGTCTCTTGCCATGGTTGGTTGCGGCAAACCCTGTCAATTATGGT 660
consensus_9613#1 ------------------------------------CCAAGGATTTCTGAATATGATGGT 24
* * *** ** *****
consensus_9613#0 CGTCCATGTGAATTGTCTTGTGTGGAAGCTTTATCA----GCAGCCCTCATAATATGTGG 716
consensus_9613#1 CAAATGATTNCAACTTTCTCTGTTACTGCATTATGTTTATGAAGACTGGATACTATGTAC 84
* * * * * *** ** **** * ** * *** *****
consensus_9613#0 GGAGGAAGAGACAGCGCATCTGTTGCTTGGGAAATTCAAGTGGGGTCACTCGTTCTTGTC 776
consensus_9613#1 TGCATATTT-ATTTTAGATTTGTGTCACCAGATGTTTTCGCA--CCCTTNTGTTGTTAT- 140
* * * ** *** * ** ** * * *** ** *
consensus_9613#0 AGTTAACAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAA 836
consensus_9613#1 GATGTGCAGAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAA 200
* ******************************************************
consensus_9613#0 TGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCTGTAAACGCGGC 896
consensus_9613#1 TGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTNCCAAAGTCACCT----------- 249
************************************ ************
consensus_9613#0 AGAGAAATCACACCAAAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTTGCC 956
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ACCTCTAGAGGAAAACCTGAACCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGA 1016
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 AAGTGAAAGTGATGAGTAACAAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACT 1076
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTGCTGTGATTCGAGCCAAAATA 1136
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GGATCTTCCGATGTCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCA 1196
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTT 1256
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CCAATCTTAAGTACAGACATGAACAAAACGAAATTGCAATGGACAGCAGCTGGTTTAGTC 1316
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ATTGCAATGGACAGGTTAGATACCTGAAATCACTTTGTATTATTCCAAATTGAGCTATGA 1376
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TCTTACATGTATTTTTGATTGATACATAAAACCTGCATTAC 1417
consensus_9613#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||