These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 790 fasta sequence [TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACAAGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTTGGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAAGAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAGCCTGGCAAACCTTTTGAA] [+] EMBL CB671671 [TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACAAGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTTGGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAAGAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAGCCTGGCAAACCTTTTGAA] [-] EMBL AK058792 [ CACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAGATCCTCTAGAAGTTTTAGAAG ] [-] EMBL AU173915 [ tttTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGTTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGNGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTGGTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATTCATCTCCATTTTCTT AAGACATCCTCCAAACTCCCAACCATGATTTGCTTAAATAAGGCAGATCCTNTAAAA ] consensusID : consensus_9636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [ATGGCAACGATAATTATTGTTTCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGGTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAACAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTGGTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTTTTGAAAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAAAACAGGAACACCATCAAAAGCATTTAAGCCAT] [+] EMBL CB662350 [ATGGCAACGATAATTATTGTTTCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCTGCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCTTGTATTGATGTTTGAAGGGTGAAACAATGAAAAAACCACACATATTTTTTCACTTTAATCCTGAACTTTTTTGTTACAAGAACCACTAACAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTGGTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATTCATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGCAAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTTTTGAAAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAAAACAGGAACACCATCAAAAGCATTTAAGCCAT] consensusID : consensus_9636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCTGCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTGGATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTTAATCCTGAACTTTTTGGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGGGTTGAGGCTTTTCCCAGGGGTATAAAGATCAAGTCATCCCAACAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGAATTCTCCAAATCCCAACATGATTGTGTTCGATAGGGAG] [-] EMBL BI812981 [TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTTTCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCTGCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTGGATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTTAATCCTGAACTTTTTGGTTACAAGAACCACTAGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGCAACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTGCTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGGGTTGAGGCTTTTCCCAGGGGTATAAAGATCAAGTCATCCCAACAGAATTCCTCTCATTCATCTCCATTTTCTTCAAGAATTCTCCAAATCCCAACATGATTGTGTTCGATAGGGAG] consensusID : consensus_9636#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [CGTGCTCGTCTCCGACCCCGCCACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCCGCTCCGAGGACGCCGACGCTCTCCTCACCCACGTGAGGATGCGGCANCGGTGGTAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTGAAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAAAATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTATTGGTTGTTAAGAAACAGAAGAAGCGTTACTGTCCGATATATTTTCAAAAGCTCAGGAGGACATAGAAAGAGAACTTACAAAGGCTTCTAAAACTTCTAGAGGATCTGCCTTATCTAAGCAAATCATG] [+] EMBL OSC23241 [CGTGCTCGTCTCCGACCCCGCCACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCCGCTCCGAGGACGCCGACGCTCTCCTCACCCACGTGAGGATGCGGCANCGGTGGTAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTGAAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAAAATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTATTGGTTGTTAAGAAACAGAAGAAGCGTTACTGTCCGATATATTTTCAAAAGCTCAGGAGGACATAGAAAGAGAACTTACAAAGGCTTCTAAAACTTCTAGAGGATCTGCCTTATCTAAGCAAATCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9636#0 TCTTTTTTTTTTTTTTTACAGATCATTTCGTTAGAAACAAGTGCAAAACATGGATTGACA 60 consensus_9636#2 ------------------------------------------------------------ consensus_9636#1 ------------------------------------------------------------ consensus_9636#3 ------------------------------------------------------------ consensus_9636#0 AGGCAAAATGATTACACGAACGTCCTTTTCGGTCCAGGTGGCTAAAGATAAGGGAAACTT 120 consensus_9636#2 ------------------------------------------------------------ consensus_9636#1 ------------------------------------------------------------ consensus_9636#3 ------------------------------------------------------------ consensus_9636#0 GGATTTTATCCCCGAAAGACCACCGAACACACACTGATCATGGCAACGTTAATTATTGTT 180 consensus_9636#2 ------------------------TTTTTTTTTTGGATCATGGCAACGTTAATTATGGTT 36 consensus_9636#1 ---------------------------------------ATGGCAACGATAATTATTGTT 21 consensus_9636#3 ------------------------------------------------------------ consensus_9636#0 TCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGTGGAACAATAATTTTCCT 240 consensus_9636#2 TCTTTTATGACTGTAATCTAGCACATAACAATAATTTTTCTGGGGAACAATAATTTTCCT 96 consensus_9636#1 TCTTTTATGACTGGAATCTAACACATAACAATAATTTTTCTGTGGAACAATAATTTTCCT 81 consensus_9636#3 -CGTGCTCGTCTCCGACCCCGC---CACCGGCCTCCGCTCCCTCGGCCTCCTCTGCTTCC 56 * * * ** * * * * * ** * * * * * consensus_9636#0 GCAACAGAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCT-TGTATTG 299 consensus_9636#2 GCAACAGAGATGATTTGGCGCCTCATACACTTCGCCAGCTTCAAGGGGAGCTGTGTATTG 156 consensus_9636#1 GCAACAAAGATGATTTTGCGCCTCATACACTTCGCCAGCTTCAAGTGGAGCT-TGTATTG 140 consensus_9636#3 GCTCCGAGGACG--CCGACGCTCT-----CCTCACCCACGTGAGGATGCGGCANCGGTGG 109 ** * ** * *** * ** ** * * * * * * * * consensus_9636#0 -ATGTTTGAAGGTTGAAACAATGAAAAAACCACACA--TATTTTTTCACTTT-AATCCTG 355 consensus_9636#2 GATGTTGGAAGGTTGAAACAATGAAAAAACCACACACATATTTTTTCACTTT-AATCCTG 215 consensus_9636#1 -ATGTTTGAAGGGTGAAACAATGAAAAAACCACACA--TATTTTTTCACTTT-AATCCTG 196 consensus_9636#3 TAGGGAGAGGGGCAAAAGTGGTGCCGATTACGCTTGATCAGGTTTACATGTTGAAGGCTG 169 * * ** ** ** * * * * *** ** ** ** *** consensus_9636#0 AACTTTTTT-GTTACAAGAACCACT--AGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 412 consensus_9636#2 AACTTTTTG-GTTACAAGAACCACT--AGCAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 272 consensus_9636#1 AACTTTTTT-GTTACAAGAACCACT--AACAAGAAAGTATTAAAAAGAAGCTCAGGCAGC 253 consensus_9636#3 AAGGTATTGCATTTCGGTTCTTACCTGACCCTCTTCAAATTAAGAATGCGTTGGAGTTAA 229 ** * ** ** * ** * * ***** ** * * * consensus_9636#0 AACTTGACACTATTGATTGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTG 472 consensus_9636#2 AACTTGACACTATGGATGGGCTGGCCATCACAGCATTTGAAGTGAGCAAGTGTATGTGTG 332 consensus_9636#1 AACTTGACACTATTGATTGGCTGGCCATCACCGCATTTGAAGTGAGCAAGTGTATGTGTG 313 consensus_9636#3 AATCTGGCTTAACTGCTTTTGATGGTGTTCCTGTTTTCCAGTCAGACCTAT---TGGTTG 286 ** ** * * * * * * * * ** * * * ** ** consensus_9636#0 CTCAAACCCTGTGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTTG 532 consensus_9636#2 CTCAAACCCGGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGTGG 392 consensus_9636#1 CTCAAACCCTGGGGTATCACTGCAAGAACAAAATTATGCTGATACCTCATTAATATGGTG 373 consensus_9636#3 TTAAGAAACAGAAGAAGCGTTACT-GTCCGATATATTTTCAAAAGCTCAGGAGGACATAG 345 * * * * * * * * * * * * * ** * * * **** * * * consensus_9636#0 GTTGAGGCTTTTCCCAGGGGGTATAAAGATCAAGTCATCCCAACCAGAATTCCTCTCATT 592 consensus_9636#2 GTTGAGGCTTTTCCCAGGGG-TATAAAGATCAAGTCATCCCAAC-AGAATTCCTCTCATT 450 consensus_9636#1 GTTGAGGCTTTTCCCAGGGGGAATAAAGATCCAGTCATCCCAACCAAAATTCCTCTCATT 433 consensus_9636#3 AAAGAGAACTTAC--AAAGGCTTCTAAAAC-------TTCTAG--AGGATCTGCCTTATC 394 *** ** * * ** ** * * * * * ** ** ** consensus_9636#0 CATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGC 652 consensus_9636#2 CATCTCCATTTTCTTCAAGA-ATTCTCCAAA-TCCCAAC-ATGATTGTGTTCGATAGGGA 507 consensus_9636#1 CATCTCCATTTTCTTCAAGACATCCTCCAAACTCCCAACCATGATTTGCTTAGATAAGGC 493 consensus_9636#3 TAAGCAAATCATG----------------------------------------------- 407 * ** * consensus_9636#0 AGATCCTCTAGAAGTTTTAGAAGCCTTTGTAAGTTCTCTTTCTATGTCCTCCTGAGCTAA 712 consensus_9636#2 G----------------------------------------------------------- 508 consensus_9636#1 AAATCCTCTAGAAGATTTACAAGCCTTTGTAAGTTCTCTTTCAAAGGCCTCCTT--TTGA 551 consensus_9636#3 ------------------------------------------------------------ consensus_9636#0 GAAGGCGAAAATGGTGAAGACCTAAATCAGACCGGGTAAACTACATGAAAGAAATTGAAG 772 consensus_9636#2 ------------------------------------------------------------ consensus_9636#1 AAATATATCGGACAGTAACGCTTCTTCTGGTTCATAACAACCCAATATGTCTAACTGGAA 611 consensus_9636#3 ------------------------------------------------------------ consensus_9636#0 CCTGGCAAACCTTTTGAA-------------- 790 consensus_9636#2 -------------------------------- consensus_9636#1 AACAGGAACACCATCAAAAGCATTTAAGCCAT 643 consensus_9636#3 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||