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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1519 fasta sequence
[ACAAAGTTTTCGCTTTTTTTTTATGCGGGAGAGATGGGGATGATTATGCTTGAGGGGGGATCTTGAGCGTGTGTATAGGATCGAGGGTTTTGAACCTGATTTCTGAAAGCGCCTGGTTTGTGAGGCTCAAGAGTCTCTGCTTTTTGCCGGTTTGAGCTTTTAACGAAAGAGGCGATGGGCTCTGTTCTGCTGAATTAGCCACCTCGAGGATGGGGAGGTTGAAGGATTGAAGCTCTCTTTTCCTTTCGCAGAAGGTGTAGGATCCTGATTTTGTTCTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGATAGAGAATCTACACCAGCCAGTGATAATGCAACATCTCCTGATTCAGATGGCACGAATTCTGCTGGACCCGCAAGAAGCAGAATTGCACTGCAGTTGGATCAGCGGTCATTGCATTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTGGAATCCTTCCACTGACACCACGACAACTGCAATATAAGGGATATCGTTTGTCACTTCTCGGCACAACCTGCACCACAGGCTATGCTTTGTTTGCTTTTTATCGGCTACCAAGAGCAGGAAACATGCATGCTGCTCAGATCTTTCACCATGTAGCTTCGTCAAAGGATTTTATACCATTCATGTACTGTCTTATGTTTGTCATGTCTAAACTGCACTTGAAGCTTGTTTTGGTACCAGTGATTTGCTGGGCACTTGAACATGTGGCCAGATTTCTACGGCGCCATTTTACTAATTCCTCTCTATACAGGACATATCTGGAGAAACCTTGCACATGGGTTGAGACAAACACAACTGCAGTCAAATTCCTGAGTTCAAATGCGGAGATTTTGTTGGGATTTCTTTTGATTTTGTCTCTGTTCTCGCGACAACGC-AATCCTATGCAAACGTTCATGTACTGGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGC-T-ACAC-TCCTTTTCTTCAT-GACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTC-AATTAATCATGTAAAGGTGTTTTTGGTT-ACAGTTCACAGTTA-ACACA-TGGAGGATCTT-TTCAGTAAGTTGTAGTTTGCGAGCGACATGTTT-AGTACCTT-TTCT-TTTTTGCGATGTT-GCGCTGATATT-ACTT-TTAGTTACT-GACAAGTAATTCTTGT-AACTTTACCT-TGACTGTAGAACTAGT-GTAGACCTTAGT-AATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATTTATT-ACTATGATGCAACT-GGATTCTGCTAAAAAAAAAAGTGATGCAGACCACTTCATGTACCATCCCAAATATAAGTTTTGGGTAGGATATGGNCTTAAGAAGGTTACACCGAAATTAAATGGAAAAATGTATGTGGATAAATTGTTTATATCTTNAGATAACTTTNTAAANGCTAA]
[+] EMBL AK103294 [ACAAAGTTTTCGCTTTTTTTTTATGCGGGAGAGATGGGGATGATTATGCTTGAGGGGGGATCTTGAGCGTGTGTATAGGATCGAGGGTTTTGAACCTGATTTCTGAAAGCGCCTGGTTTGTGAGGCTCAAGAGTCTCTGCTTTTTGCCGGTTTGAGCTTTTAACGAAAGAGGCGATGGGCTCTGTTCTGCTGAATTAGCCACCTCGAGGATGGGGAGGTTGAAGGATTGAAGCTCTCTTTTCCTTTCGCAGAAGGTGTAGGATCCTGATTTTGTTCTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGATAGAGAATCTACACCAGCCAGTGATAATGCAACATCTCCTGATTCAGATGGCACGAATTCTGCTGGACCCGCAAGAAGCAGAATTGCACTGCAGTTGGATCAGCGGTCATTGCATTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTGGAATCCTTCCACTGACACCACGACAACTGCAATATAAGGGATATCGTTTGTCACTTCTCGGCACAACCTGCACCACAGGCTATGCTTTGTTTGCTTTTTATCGGCTACCAAGAGCAGGAAACATGCATGCTGCTCAGATCTTTCACCATGTAGCTTCGTCAAAGGATTTTATACCATTCATGTACTGTCTTATGTTTGTCATGTCTAAACTGCACTTGAAGCTTGTTTTGGTACCAGTGATTTGCTGGGCACTTGAACATGTGGCCAGATTTCTACGGCGCCATTTTACTAATTCCTCTCTATACAGGACATATCTGGAGAAACCTTGCACATGGGTTGAGACAAACACAACTGCAGTCAAATTCCTGAGTTCAAATGCGGAGATTTTGTTGGGATTTCTTTTGATTTTGTCTCTGTTCTCGCGACAACGC AATCCTATGCAAACGTTCATGTACTGGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGC T ACAC TCCTTTTCTTCAT GACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTC AATTAATCATGTAAAGGTGTTTTTGGTT ACAGTTCACAGTTA ACACA TGGAGGATCTT TTCAGTAAGTTGTAGTTTGCGAGCGACATGTTT AGTACCTT TTCT TTTTTGCGATGTT GCGCTGATATT ACTT TTAGTTACT GACAAGTAATTCTTGT AACTTTACCT TGACTGTAGAACTAGT GTAGACCTTAGT AATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATT ]
[+] EMBL BQ907082 [ GGC CCA TTTACTAATTCCTCTCTATACAGGACATATCTGGAGAAACCTTGCACATGGGTTGAGAC AACACAACTGCAGTCAAATTCCTGAGTTCAAATGCGGAGATTTT TTGGGATTTCTTTTGATTTTGTCTCTGTTCTCGCGACAACGCAAATCCTATGCAAACGTTCATGTACTGGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGCGT ACAC TCCTTTTCTTCAT GACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTC AATTAATCATGTAAAGGTGTTTTTGGTT ACAGTTCACAGTTA ACACACTGGAGGATCTTGTTCAGTAAGTTGTAGTTTGCGAGCGACATGTTT AGTACCTT TTC TTTTTGCGATGTT GCGCTGATATT ACTT TTAGTTACT GACAAGTAATTCTTGT AACTTTACCT TGACTGTAGAACTAGT GTAGACCTTAGT AATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATTTATT ACTATGATGCAACT GGATTCTGCTAAAAAAAAAA ]
[+] EMBL AU174061 [ CAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGC T ACAC TCCTTTTCTTCAT GACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTC AATTAATCATGTAAAGGTGTTTTTGGTT ACAGTTCACAGTTA ACACA TGGAGGATCTT TTCAGTAAGTTGTAGTTTGCGAGCGACATGTTT AGTACCTT TTC TTTTTGCGATGTT GCGCTGATATT ACTT TTAGTTACT GACAAGTAATTCTTGT AACTTTACCT TGACTGTAGAACTAGT GTAGACCTTAGT AATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATTTATT ACTATGATGCAACT GGATTCTGCTAAAAA ]
[+] EMBL BM421615 [ CGTACAGTTAATCCCTATATCCATCGC TGACACGNCCGTTTCTTCATGGACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTCAAATTAATCATGTAAAGGTGTTTTTGGTTGACAGTTCACAGTTAGACACA TGGAGGATCTT TTCAGTAAGTTGTAGTTTGCGAGCGACATGTTTGAGTACCTTGTTCTGTTNTTGCGATGTTGGCGCTGATATTGACTTGTTAGTTACTGGACAAGTAATTCTTGTGAACTTTACCTGTGACTGTAGAACTAGTGGTAGACCTTAGTGAATATGGCCCATACCNTGAAGTGAAAAATGGAAAAGC ATTTATTGACTATGANGCAACTGGGATTCTGCTCCTGGATNTTGTGATGCAGACCACTTCATGTACCATCCCAAATATAAGTTTTGGGTAGGATATGGNCTTAAGAAGGTTACACCGAAATTAAATGGAAAAATGTATGTGGATAAATTGTTTATATCTTNAGATAACTTTNTAAANGCTAA]
consensusID : consensus_9639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[ACATCAAACAGAATAAGTACCAAATGACGCTTAATTTTGCACTGCACATGCTGGCTAAAATGCTGGTGACGAGCTCGTCCAAATGCGGATAGCTATATTTCAATAATCTCAGGATGCCAGCCAAGGGAAAAGGTGCTCCCATGGCTGAACAAAATTACCAATTAAGTGTATGCAATATTTGCATTTAAAAGATAATTTGGGCAATTTTAGTTACTTCTGCTCTCAGTTGTAAACCGCAAACCGCGCCCCTGCATTTAAATGAATGCTTGTCGGGTTGTAGAGAAAATTTATTATTTATTAATGTTATAGTCACAGAAAATTTTTAGCAAATCACTATCTCACTCTGTTTACCCGCTATTGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGCTACACTCCTTTTTTTCATGACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTCAATTAATCATGTAAAGGTGTTTTTGGTTACAGTTCACAGTTAACACATGGAGGATCTTTTCAGTAAGTTGTAGTTTGCGAGCGACATGTTTAGTACCTTTTCTTTTTGCGATGTTGCGCTGATATTACTTTTAGTTACTGACAAGTAATTCTTGTAACTTTACCTTGACTGTAGAACTAGTGTAGACCTTAGTAATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATTT]
[-] EMBL CB663573 [ACATCAAACAGAATAAGTACCAAATGACGCTTAATTTTGCACTGCACATGCTGGCTAAAATGCTGGTGACGAGCTCGTCCAAATGCGGATAGCTATATTTCAATAATCTCAGGATGCCAGCCAAGGGAAAAGGTGCTCCCATGGCTGAACAAAATTACCAATTAAGTGTATGCAATATTTGCATTTAAAAGATAATTTGGGCAATTTTAGTTACTTCTGCTCTCAGTTGTAAACCGCAAACCGCGCCCCTGCATTTAAATGAATGCTTGTCGGGTTGTAGAGAAAATTTATTATTTATTAATGTTATAGTCACAGAAAATTTTTAGCAAATCACTATCTCACTCTGTTTACCCGCTATTGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCGCTACACTCCTTTTTTTCATGACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCATGGATATGGCTCAATTAATCATGTAAAGGTGTTTTTGGTTACAGTTCACAGTTAACACATGGAGGATCTTTTCAGTAAGTTGTAGTTTGCGAGCGACATGTTTAGTACCTTTTCTTTTTGCGATGTTGCGCTGATATTACTTTTAGTTACTGACAAGTAATTCTTGTAACTTTACCTTGACTGTAGAACTAGTGTAGACCTTAGTAATATGGCCAATACCATGAAGTGAAAAATGGAAAAGCAATTT]
consensusID : consensus_9639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[TCGAGGAGGAGAAGGGAAGAGAAGAGAAGAGAAGAGCTCTCCCCTCCCTCTGCGGCGTGTCGGAGCAGGCGATTGGCTCCGTTCCAACAGTCCAAGACGAGGATTATTTTACAAAGGGTGTAGGATCCTGATTTTGTTCTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGATAGAGAATCTACACCAGCCAGTGATAATGCAACATCTCCTGATTCAGATGGCACGAATTCTGCTGGACCCGCAAGAAGCAGAATTGCACTNCAGTTGGATCAGCGGTCATTGCATTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTNGAATCCTTCCAC]
[+] EMBL OSS15009A [TCGAGGAGGAGAAGGGAAGAGAAGAGAAGAGAAGAGCTCTCCCCTCCCTCTGCGGCGTGTCGGAGCAGGCGATTGGCTCCGTTCCAACAGTCCAAGACGAGGATTATTTTACAAAGGGTGTAGGATCCTGATTTTGTTCTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGATAGAGAATCTACACCAGCCAGTGATAATGCAACATCTCCTGATTCAGATGGCACGAATTCTGCTGGACCCGCAAGAAGCAGAATTGCACTNCAGTTGGATCAGCGGTCATTGCATTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTNGAATCCTTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9639#0 ACAAAGTTTTCGCTTTTTTTTTATGCGGGAGAGATGGGGATGATTATGCTTGAGGGGGGA 60
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 TCTTGAGCGTGTGTATAGGATCGAGGGTTTTGAACCTGATTTCTGAAAGCGCCTGG--TT 118
consensus_9639#2 ----------------------------------------TCGAGGAGGAGAAGGG--AA 18
consensus_9639#1 -------------------------------------ACATCAAACAGAATAAGTACCAA 23
* *
consensus_9639#0 TGTGAGGCTCAAGAGTCTCTGCTTTTTGCCGGTT------TGAGCTTTTAACGAAAGAG- 171
consensus_9639#2 GAGAAGAGAAGAGAAGAGCTCTCCCCTCCCTCTG------CGG---CGTGTCGGAGCAG- 68
consensus_9639#1 ATGACGCTTAATTTTGCACTGCACATGCTGGCTAAAATGCTGGTGACGAGCTCGTCCAAA 83
* ** * * *
consensus_9639#0 -GCGATGGGCTCTGTTCTGCTGAATTAGCCACCTCGAGGATGGGGAGGTTGAAGGATTGA 230
consensus_9639#2 -GCGATTGGCTCCGTTCCAACAG----------TCCAAGACGAGGA-------------- 103
consensus_9639#1 TGCGGATAGCTATATTTCAATAATCTCAGGATGCCAGCCAAGGGAAAAGGTGCTCCCATG 143
*** *** ** * * * * *
consensus_9639#0 AGCTCTCTTTTCCTTTCGCAGAAGGTGTAGGATCCT--------------GATTTTGTT- 275
consensus_9639#2 ----------TTATTTTACAAAGGGTGTAGGATCCT--------------GATTTTGTT- 138
consensus_9639#1 GCTGAACAAAATTACCAATTAAGTGTATGCAATATTTGCATTTAAAAGATAATTTGGGCA 203
* ** * ** * **** *
consensus_9639#0 -CTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGAT---AGAGAA 331
consensus_9639#2 -CTTGAGGTATGTCCTCAACCAGTTCTTCACAGCCACCAGCATCGTCAGAT---AGAGAA 194
consensus_9639#1 ATTTTAGTTACTTCTGCTCTCAGTTGTAAACCGCAAACCGCGCCCCTGCATTTAAATGAA 263
** ** ** ** * ***** * ** ** * * ** * ** * ***
consensus_9639#0 TCTACACCAGCCAGT---GATAATGCAACATCTCCTGATTCAGATGGCACGAA----TTC 384
consensus_9639#2 TCTACACCAGCCAGT---GATAATGCAACATCTCCTGATTCAGATGGCACGAA----TTC 247
consensus_9639#1 TGCTTGTCGGGTTGTAGAGAAAATTTATTATTTATTAATGTTATAGTCACAGAAAATTTT 323
* * * ** ** *** * ** * * ** * *** * **
consensus_9639#0 TGCTGGACC-----CGCAAGAAGCAGAATTGC-ACTGCAGTTGGATCAGCGGTCATTGCA 438
consensus_9639#2 TGCTGGACC-----CGCAAGAAGCAGAATTGC-ACTNCAGTTGGATCAGCGGTCATTGCA 301
consensus_9639#1 TAGCAAATCACTATCTCACTCTGTTTACCCGCTATTGCAGTTACTGAAGCTCATGTATCA 383
* * * * ** * * ** * * ***** *** * **
consensus_9639#0 TTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTGGAAT---CCTTCCACTGAC 495
consensus_9639#2 TTTTTCTGTTACTGCTTGGGTTCTTATTGTTGCATTGATTNGAAT---CCTTCCAC---- 354
consensus_9639#1 CTCTCCTTTCACTGCCGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAA 443
* * ** * ***** * ** * * * * * ** *** ** * **
consensus_9639#0 ACCACGACAACTGCAATATAAGGGATATCGTTTGTCACTTCTCGGCACAACCTGCACCAC 555
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 TCCCTATATCCATCGCTACACTCCTTTTTTTCATGACCCGATAAATGCTGGCATGAGATG 503
consensus_9639#0 AGGCTATGCTTTGTTTGCTTTTTATCGGCTACCAAGAGCAGGAAACATGCATGCTGCTCA 615
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 GTGGTTCAGGTAGCATGGATATGGCTCAATTAATCATGTAAAGGTGTTTTTGGTTACAGT 563
consensus_9639#0 GATCTTTCACCATGTAGCTTCGTCAAAGGATTTTATACCATTCATGTACTGTCTTATGTT 675
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 TCACAGTTAACACATGGAGGATCTTTTCAGTAAGTTGTAGTTTGCGAGCGACATGTTTAG 623
consensus_9639#0 TGTCATGTCTAAACTGCACTTGAAGCTTGTTTTGGTACCAGTGATTTGCTGGGCACTTGA 735
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 TACCTTTTCTTTTTGCGATGTTGCGCTGATATTACTTTTAGTTACTGACAAGTAATTCTT 683
consensus_9639#0 ACATGTGGCCAGATTTCTACGGCGCCATTTTACTAATTCCTCTCTATACAGGACATATCT 795
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 GTAACTTTACCTTGACTGTAGAACTAGTGTAGACCTTAGTAATATGGCCAATACCATGAA 743
consensus_9639#0 GGAGAAACCTTGCACATGGGTTGAGACAAACACAACTGCAGTCAAATTCCTGAGTTCAAA 855
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 GTGAAAAATGGAAAAGCAATTT-------------------------------------- 765
consensus_9639#0 TGCGGAGATTTTGTTGGGATTTCTTTTGATTTTGTCTCTGTTCTCGCGACAACGCAATCC 915
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 TATGCAAACGTTCATGTACTGGCAGTTACTGAAGCTCATGTATCACTCTCCTTTCACTGC 975
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 CGGTTATCACAGAGCTATCTGGCTTAAAATTGGCCGTACAGTTAATCCCTATATCCATCG 1035
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 CTACACTCCTTTTCTTCATGACCCGATAAATGCTGGCATGAGATGGTGGTTCAGGTAGCA 1095
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 TGGATATGGCTCAATTAATCATGTAAAGGTGTTTTTGGTTACAGTTCACAGTTAACACAT 1155
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 GGAGGATCTTTTCAGTAAGTTGTAGTTTGCGAGCGACATGTTTAGTACCTTTTCTTTTTT 1215
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 GCGATGTTGCGCTGATATTACTTTTAGTTACTGACAAGTAATTCTTGTAACTTTACCTTG 1275
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 ACTGTAGAACTAGTGTAGACCTTAGTAATATGGCCAATACCATGAAGTGAAAAATGGAAA 1335
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 AGCAATTTATTACTATGATGCAACTGGATTCTGCTAAAAAAAAAAGTGATGCAGACCACT 1395
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 TCATGTACCATCCCAAATATAAGTTTTGGGTAGGATATGGNCTTAAGAAGGTTACACCGA 1455
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 AATTAAATGGAAAAATGTATGTGGATAAATTGTTTATATCTTNAGATAACTTTNTAAANG 1515
consensus_9639#2 ------------------------------------------------------------
consensus_9639#1 ------------------------------------------------------------
consensus_9639#0 CTAA 1519
consensus_9639#2 ----
consensus_9639#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||