These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 812 fasta sequence [TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGC-GGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT] [+] EMBL CB685658 [TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGC GGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCC ] [+] EMBL AU181035 [ CAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCNGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAA ] [-] EMBL CB685659 [ TCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCAGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT] consensusID : consensus_9655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence [ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA] [+] EMBL AK103892 [ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA] [+] EMBL AK061168 [ GCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA] [+] EMBL C27995 [ AGAAGGTCCCAATACTGACGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTNTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9655#0 ---------------------TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTA 39 consensus_9655#1 ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTA 60 *** *********************************** consensus_9655#0 ACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCC 99 consensus_9655#1 ACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCC 120 ************************************************************ consensus_9655#0 TCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCG 159 consensus_9655#1 TCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCG 180 ************************************************************ consensus_9655#0 GCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCA 219 consensus_9655#1 GCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCA 240 ************************************************************ consensus_9655#0 TCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACC 279 consensus_9655#1 TCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACC 300 ************************************************************ consensus_9655#0 TTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAG 339 consensus_9655#1 TTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAG 360 ************************************************************ consensus_9655#0 AACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTA 399 consensus_9655#1 AACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTA 420 ***************************************************** ****** consensus_9655#0 GACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATC 459 consensus_9655#1 GACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATC 480 ************************************************************ consensus_9655#0 AAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGAT 519 consensus_9655#1 AAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGAT 540 ************************************************************ consensus_9655#0 TCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGT 579 consensus_9655#1 TCATCAG----------------------------------------------------- 547 ******* consensus_9655#0 GGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGT 639 consensus_9655#1 ------------------------------------------------------------ consensus_9655#0 TACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATA 699 consensus_9655#1 ------------------ATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATA 589 ****************************************** consensus_9655#0 AAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATG 759 consensus_9655#1 AAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATG 649 ************************************************************ consensus_9655#0 TCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT 812 consensus_9655#1 TCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA- 701 **************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||