These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1250 fasta sequence [GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT-CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC-TCATCCT-CTGCGCGTACACGGCGTGC-GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA-AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAGCCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAAA] [+] EMBL AK069496 [GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC TCATCCT CTGCGCGTACACGGCGTGC GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAGCCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACA ] [+] EMBL AK061176 [GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC TCATCCT CTGCGCGTACACGGCGTGC GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGA ] [+] EMBL BE229569 [ cgagCCCGTTTAMCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCKCGCCGCCTCCGACCGAAKCCACKCCCCCCCCAKCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCRCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTMCAACTWCCACCGGGCCGGGAACCACCCCACCTCGTTCATCGACCAGGCCAGGGGCTTCCACTTCCGGWCATCGTTCGTCGACCTCCCCGCCGTBTCCGCCGCGCGTTCCCTCCTTAATCCTYTTGCGCGAACACGGCGBGCGGGGGGAGGCG ] [+] EMBL BI812615 [ GCCA CT CCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACACAACTGAATGCCACGGCATGGCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTAC ACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAGTGCAAAAATAGGATGA CCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAAA] consensusID : consensus_9691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTTTTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGTTTGGNNNAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGGGGGGCCCAAAAAGGCCNTNTGGGGTNNAGGGCAGGGCCATTTTTTTCCCGGGGAGCAAGTTCTTCATGTCGTTGGCGTTCCCCCCGGCGAAAATTGCATGGCCTAACGGCGCAAGTGCGGGGAGGGAACGCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGGTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGGACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAG] [-] EMBL BE229040 [NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTTTTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGTTTGGNNNAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGGGGGGCCCAAAAAGGCCNTNTGGGGTNNAGGGCAGGGCCATTTTTTTCCCGGGGAGCAAGTTCTTCATGTCGTTGGCGTTCCCCCCGGCGAAAATTGCATGGCCTAACGGCGCAAGTGCGGGGAGGGAACGCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGGTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGGACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAG] consensusID : consensus_9691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [CCCATGGCCTACCGCGCCACCTCCCGATGCTGACCCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGCCCAAGTCCCTGAAGCACAGTTCCCCGTATGACACTCAGCTGCCTGCCCTTGCAGTCGGACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGCAAAATAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGGTTTCCCATTTTGAGCTGTGAGCC] [+] EMBL BI809123 [CCCATGGCCTACCGCGCCACCTCCCGATGCTGACCCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGCCCAAGTCCCTGAAGCACAGTTCCCCGTATGACACTCAGCTGCCTGCCCTTGCAGTCGGACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGCAAAATAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGGTTTCCCATTTTGAGCTGTGAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9691#0 GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTTCCGTCTCGCGTTCTTCGA 60 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCC 120 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGC 180 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 TAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGA 240 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCG 300 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGC 360 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTT 420 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 CCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCG 480 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCCTCATCCTCTGCGC 540 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 --------------NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTT 46 consensus_9691#0 GTACACGGCGTGCGGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGG 600 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 TTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGT 106 consensus_9691#0 CTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGC 660 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 TTGGNN----NAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGG-GGGGCCCAAAAAGGC 161 consensus_9691#0 CGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTC 720 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 CNTNTGGGGTNNA---GGGCAGGGCCATTTTTTTCCCGGGGAG--CAAGTTCTTCATGTC 216 consensus_9691#0 GCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACG 780 consensus_9691#2 -------------------------CCCATGGCCTACCGCGCCACCTCCCGATGCTGAC- 34 consensus_9691#1 GTTGGCGTTCCCCCCGGCGAAAATTGC-ATGGCCTAACGGCGCAAGTGCGGGGAGGGAAC 275 * ******** ** ** * * * ** consensus_9691#0 CCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCA-AACGC 839 consensus_9691#2 CCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGC 94 consensus_9691#1 GCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGG-TAAAGGGAGGCCA-AACGC 333 *** ** * ** ***** ** ** ** * ******** ********* *** ***** consensus_9691#0 CCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTC-GCTGCCTGGCCGTTGCAGTCGG 898 consensus_9691#2 CCAAGTCCCTGAAGCA-CAGTTCCCCGTATGACACTCAGCTGCCTG-CCCTTGCAGTCGG 152 consensus_9691#1 CCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGG 393 **************** ****** ********** ******** ** ********** consensus_9691#0 ACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAAT 958 consensus_9691#2 ACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAAT 212 consensus_9691#1 ACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAAT 453 **** ******************* ************ ********************* consensus_9691#0 TTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 1018 consensus_9691#2 TTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 272 consensus_9691#1 TTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 513 ********* ************************************************** consensus_9691#0 G-TAAAGAAGA-TGTAAATACGAAACATT--TGTGCTTCG-GCCTCCT-GCAGTCAATGC 1072 consensus_9691#2 GCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGC 332 consensus_9691#1 G-TAAAGAAGA-TGTAAATACGAAACATT--TGTGCTTCG-GCCTCCT-GCAGTCAATGC 567 * ********* *************** * ********* ******* ******* *** consensus_9691#0 AAAAATAGGATGAGCCGTTC-GGCAGATGCA-TGC-TTGTCATTTTTGGTGGGTTTCCCA 1129 consensus_9691#2 AAAA-TAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGG-TTTCCCA 390 consensus_9691#1 AAAAATAGGATGAG---------------------------------------------- 581 **** ********* consensus_9691#0 TTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATC 1189 consensus_9691#2 TTT-TGAGCTGTGAGCC------------------------------------------- 406 consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 GGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAA 1249 consensus_9691#2 ------------------------------------------------------------ consensus_9691#1 ------------------------------------------------------------ consensus_9691#0 A 1250 consensus_9691#2 - consensus_9691#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||