These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1220 fasta sequence [AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG-TTAC-GCAGGTGCACTGC-ACTAGTAGTACATAGTAG-AGTATTATATTCTACACGGGCGGCACATTAGTTCG---TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC-TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG--GTGTCAGTTTGGACATATA--TACATATACAGTAATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCAAAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCAAACTGCCAGCACACACAAAACTA] [+] EMBL AK059980 [AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCA CCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAATCCACGACGCGGCGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTGGTGCTCCTCGTCCTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCACGTCGGTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCACACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG TTAC GCAGGTGCACTGC ACTAGTAGTACATAGTAG AGTATTATATTCTACACGGGCGGCACATTAGTTCG TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG GTGTCAGTTTGG ATA T ATATACAGTAATTTCACTATTCT ] [+] EMBL AK104583 [ TACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGAGACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACCCACACCA CCACGGCGCCACCCTTCAGAGCCCATAAGGACGCCGACCTGGAATCCACGACGCGGCGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTTGTGGTGCTCCTCGTCCTTGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCACCTCGTCTCCACCCGCCTCACCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCACGTCGGTCCAGCTCAACGTCACGCTGCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCACACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGACGTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCGCGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTG TTAC GCAGGTGCACTGC ACTAGTAGTACATAGTAG AGTATTATATTCTACACGGGCGGCACATTAGTTCG TTACAGATAGTATCAGATCAGGAATTCAGGATTCAGTGC TACGATTTTCTTCAATATTTCTTACTGCGTGTTGGGATTGATTTGATTCATGTATATAACACG GTGTCAGTTTGGATATATA TACAgtaa ] [+] EMBL AK101778 [ AACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTCCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTGACGGACGTGATGGGCGGGTCGGTGGCGCTGGAGGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCACATCGCGACGTGGGACAAGACGAGAAGCCATAT TTTGTTGTTTTGTTTACACCACG CAACTGCTACTAGAAGTACATAG AGTATTACTATATTCTACACGGGTGGCACATTAGTTCGTTATTACAGATAGTATAAGATCAGGAATTCAGGATTCAGGACTTCCGATTTTCTTCAGTATTTCTTGATGGGTGTTGGGATTGATTCGATTCATGTATATAACACGGTGTGTCAGTTTTGACATATACGTACATATACA ] [+] EMBL CA755169 [ AACGGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCNCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGNGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCAAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCCACGTCACCATGGCGCTCACCCT ] [+] EMBL AK060359 [ GGCAGCGGCAGCATCCTCCCCACCCACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCCAGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTACTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGACCCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCGGCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAACCCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCACGTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACCATGGCGCTCACCCTCCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTGACGGACGTGATGGGCGGGTCGGTGGCGCTGGAGGCGAGCACTCGGATCCCCGGGAGGGTGGCCATCCTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTCACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATGTGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCACATCGCGACGTGGGACAAGACGAGAAGCCATAT TTTGTTGTTTTGTTTACACCACG CAACTGCTACTAGAAGTACATAG AGTATTACTATATTCTACACGGGTGGCACATTAGTTCGTTATTACAGATAGTATAAGATCAGGAATTCAGGATTCAGGACTTCCGATTTTCTTCAGTATTTCTTGATGGGTGTTGGGATTGATTCGATTCATGTATATAACACGGTGTGTCAGTTTTGACATATACGTACATATACAGT ATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCAAAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCAAACTGCCAGCACACACAAAACTA] consensusID : consensus_9708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [TTTTTTGTTTACCCACCACTGCTACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTGCACTTAGTTCTATTACGATAGTATAAGATCGGAATTCAGGATTCAGGACTTCCGATTTTCTCTATTTCTGATGGTTTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTTTTTTTTTTTGAAAAACCATTATACGTACATATACGTATTTCCTATT] [+] EMBL BI794920 [TTTTTTGTTTACCCACCACTGCTACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTGCACTTAGTTCTATTACGATAGTATAAGATCGGAATTCAGGATTCAGGACTTCCGATTTTCTCTATTTCTGATGGTTTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTTTTTTTTTTTGAAAAACCATTATACGTACATATACGTATTTCCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9708#0 AATTACTACTAGTCTCCCTTCCACGCCACGCACACGCACCCAATCCCCTATCGATCGAGA 60 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 GACATGGCCTCCACCACCGCCACCGCCGCCGGCAACGGCAGCGGCAGCATCCTCCCCACC 120 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CACACCATCGCCGCCACGGCGCCACCCTTCAGAACCCACAAGGACGCCGACCTGGAATCC 180 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 AGGAGGCGACGGCGCCGGCGACGCTGCCTGTGCTGCTGCCTGCTCGTCACCCTGGTGGTA 240 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CTACTCGTGCTGGCCATCACCCTCCTGGTCCTCTTCCTCACGGTGCTCCGCGTCCGCGAC 300 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CCCACCACCCGCCTCGTCTCCACCCGCCTCATCGGCCTCTCCCCGCGCCTCTCCTTCCCG 360 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 GCCATGTCGGTCCAGCTCAACGTCACGCTCCTCATCACCGTGGCGGTGCACAACCCCAAC 420 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CCGGCCTCCTTCACCTACGCCACGGGGGGCCACACCGACCTCACCTACAGGGGCGCCCAC 480 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 GTCGGCGACGCCGAGATCGACCCGGGCCGAATCCCGAGCCGTGGGGACGCCAACGTCACC 540 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 ATGGCGCTCACCCTGCAGGCCGACCGCTTCGCCGGCGACCTCACGCAGCTCGTCTCCGAC 600 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 GTGATGGGCGGGTCGGTGGCGCTGGACGCGAGCACTCGGATCCCCGGGAGGGTGGCCATC 660 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CTGGGCGTGTTCAAGCGCCACGCGGTGGCGTACTCGGATTGCCATTTCGTGTTCGGCGTC 720 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 ACGGAGATGGCCGTGCGTAGCCAGCAGTGCAGCGACCGCACCAAGCTCTGATTGATCATG 780 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 TGATTCCAACTTAATTTGCAAGTTTCCAAGCACGCAACGTAAGGTGGGCATGCCGCATCG 840 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 CGACGTGGGACAAGACGAGAAGCCGTATGATATGCTGCTTTGTTACGCAGGTGCACTGC- 899 consensus_9708#1 ----------------------------------TTTTTTGTTTACCCAC---CACTGCT 23 * ** **** ** ****** consensus_9708#0 ACTAGTAGTACATA-GTAGAGTATTA-TATTCTACACGGGCGGCACATTAGTTCGTTACA 957 consensus_9708#1 ACTAGAAGTAAGTACATAGAGTATTACTATATTCTACCGGTG-CAC-TTAGTTCTATTAC 81 ***** **** ** ********** *** * ** ** * *** ******* * consensus_9708#0 GATAGTATCAGATCAGGAATTCAGGATTCAGTGCTACGATTTTCTTCAATATTTCTTACT 1017 consensus_9708#1 GATAGTATAAGATC-GGAATTCAGGATTCAGGACTTCCGATTTTCTC--TATTTCTGATG 138 ******** ***** **************** ** * *** ** ******* * consensus_9708#0 GCGTGTTGGGATTGATTTGATTCATGTATATAACACGGTGTCAGTTTGGACATATATACA 1077 consensus_9708#1 GT---TTGGGATTGATTCGATTCATGTATATAACCGTGTGCCTTTTT-----TTTTTTTT 190 * ************ **************** *** * *** * * * consensus_9708#0 TATACAGTAATTTCACTATTCTCATGTTTACTAGCTACTAATCCAAAAATTCCTAATCCA 1137 consensus_9708#1 TGAAAAACCATTATAC-GTACATATACGTATTTCCTATT--------------------- 228 * * * *** ** * * ** ** * *** * consensus_9708#0 AAGCACCAAACTTCAGTTTAACTTTAACAGACCTTTCTCCACAGCATGCCCACAGCGGCA 1197 consensus_9708#1 ------------------------------------------------------------ consensus_9708#0 AACTGCCAGCACACACAAAACTA 1220 consensus_9708#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||