These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1497 fasta sequence [ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGCCGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCACGCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGGATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGCCGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGATATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTTTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGACCTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCCAGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGATGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAGATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGTCACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGGATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTTAAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC] [+] EMBL AK106413 [ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGCCGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCACGCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGGATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGCCGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGATATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTAAGCCTGAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCATCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGACCTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCCAGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGATGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAGATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGTCACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGGATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTTAAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC] [+] EMBL CA998295 [ TTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAGGAAACTCTAGTATTCTTCGATCG ] [+] EMBL CA998366 [ TTTAATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTNAAACTTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAAT ] [+] EMBL CA998358 [ TTTATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTTCACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATGTTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTACCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAATTCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAAGAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCCTTCATAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACCTATTACGTGACTACATATAAGAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGG ] [+] EMBL CA999807 [ GTTTTCAGGTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGTTTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAG ] consensusID : consensus_9725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [TCGCAAAGTACACTGTAACTTACTGTGCTGGTTTTATGCAATAGACAAGTTGGTAAATATATCATACCTAGGGCAAACAGTTTAGATGCTAACACCGTTGGATGTTTTTTAAATGATGATTGACAGGGGAGGTAGTGGTTTTATGAACAATTCCTCTGTGGAACACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTAGAACAGTTAACGTGGAGAGGTAGCAACAAGAAATATGAATTTGGTGAAAATATTTTGAAGTGCACAAATCAAAATGGGTTCACATAAATTTCTGGATATAAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATGTTGCAGAAGATATGATTACATGGATTACTTATTTCTTATGCCTTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGTATGTAACTGTACTTTCTTCTTTCTTGG] [+] EMBL CF305604 [TCGCAAAGTACACTGTAACTTACTGTGCTGGTTTTATGCAATAGACAAGTTGGTAAATATATCATACCTAGGGCAAACAGTTTAGATGCTAACACCGTTGGATGTTTTTTAAATGATGATTGACAGGGGAGGTAGTGGTTTTATGAACAATTCCTCTGTGGAACACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTAGAACAGTTAACGTGGAGAGGTAGCAACAAGAAATATGAATTTGGTGAAAATATTTTGAAGTGCACAAATCAAAATGGGTTCACATAAATTTCTGGATATAAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATGTTGCAGAAGATATGATTACATGGATTACTTATTTCTTATGCCTTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAGGTGCTCCTTTTATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTAAGGTATGTAACTGTACTTTCTTCTTTCTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9725#0 ACCGCCTCCTCCTCCGCCGCGGCGCGATGCCCGTCCCCCCGCCGCTGCCCCCGCGGACGC 60 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 CGCCGCCGGGGGTCGCGCGCCCCTTCGCCTCCCTCCCTCCCCCACCGCCTCTCCAGTCAC 120 consensus_9725#1 --------------------------------------------------------TCGC 4 ** * consensus_9725#0 GCAGGGAGGTGCATGTTTGGTATGTTTGCCCTGATGAGCTGAATGATCACTCCCACCTGG 180 consensus_9725#1 AAAGTACACTGTA-ACTTACTGTGCTGGTTTT-ATGCAATAGACAA--GTTGGTAAATAT 60 ** ** * ** * ** * * * *** * * * * * * consensus_9725#0 ATATGTACATGGAACTCCTTTCTCCCTCCGAAAGGAAGAACGCGCTGTCTATGAACGGGC 240 consensus_9725#1 AT-CATACCTAGGGCAAA-----CAGTTTAGATGCTAACAC-CGTTGGATGTTTTTTAAA 113 ** *** * * * * * * * * ** ** ** * * consensus_9725#0 CGAGGCTGCAGAAAGATGCTATGTTGTCGCGTGCATTGCTGCGCACTACCCTCTCAAGAT 300 consensus_9725#1 TGATGATTGACAGGGGAGGTA---------GTGGTTTTATGAACAATTCCTCTGTGGAAC 164 ** * * * * * * ** *** ** ** ** * ** * consensus_9725#0 ATACAAATTCTAAAATTGATCCAAGATCATTTGAGTTTAAGAAGAATAAATTTGGTTTTA 360 consensus_9725#1 ACTAAATTGTTGAGGATGCGTTCTCACCATTTGAATTTAGTTAATTGGAATATCGTA--G 222 * ** * * * ** * ******* **** * *** * ** consensus_9725#0 ATCAGATATTGTGGCGGTCTGATGATAGCAATATGGAGTGGCCTTGGCATTTTAATATTT 420 consensus_9725#1 AACAGTTAACGTGGAGA------GGTAGCAACAAGAA-----------ATATGAATTTGG 265 * *** ** **** * * ****** * * * ** * *** * consensus_9725#0 CACACACATCTTCTCTGATTGCCTGCGGCATTGCGATGGATGCTCCTATTGGCATTGATG 480 consensus_9725#1 TGAAAATATTTTG---AAGTGCACAA---ATCAAAATGGGTTCACATAAATTTCTGGATA 319 * * ** ** * *** ** **** * * * ** * *** consensus_9725#0 TTGAAGAAAAGAAGAGAAAGACAACCAAGAGTATTTTATCTCTTGCTCGCCGTTACTTTA 540 consensus_9725#1 T--AAAATCGATCCATGTAGAACATAGAGAGGTTATTAACACTGATTTGGCGATATGATG 377 * ** * * *** * **** * *** * ** * * ** ** * consensus_9725#0 CCCCTTCAGAAGTTGATTCTCTAGCTAAAATTGCTGATTCTGATGCTCAGCAAAAGGAAT 600 consensus_9725#1 ---TTGCAGAAGATA--TGATTACATGGATTACTTATTTCTTATGCC------------- 419 * ****** * * ** * * * * **** **** consensus_9725#0 TCATAAAACTATGGACCCTAAAAGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAG 660 consensus_9725#1 -----------TTGAACTTTTAGGAGGCATATGTTAAGGCTCTTGGAAGGGGGTTTTCAG 468 * ** * * * ************************************* consensus_9725#0 GTGCTCCTTTTAATAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTA 720 consensus_9725#1 GTGCTCCTTTTA-TAGGTTTTCAATCCAATTGAAAACAAATAGCCGAATTCAGATTACTA 527 ************ *********************************************** consensus_9725#0 AGGCACCAAAAGTGTGTAATGATTCTGATTCTGGTGATTATCTTTCTGAGAACTGGCGGT 780 consensus_9725#1 AGGTATGTAA---CTGTACTTTCTTCTTTCTTGG-------------------------- 558 *** * ** **** * * * *** consensus_9725#0 TTGCACTTACAGAGCTAAACAGTTCTTATTATATGGCGGTTTGTATAGAGGACAACTCAA 840 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 GAGGTTCTGAAAATGGTTCAGTACCACTAGGATTGAAAGTATGGAAGACCGTTCCATTCA 900 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 TAGAAGATACACTTGTTTCTGGAACAGATGCCGTAAAACTTATTACGTGACTACATATAA 960 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 GAATCTACCATTTATCATGTGAATTCGTCATATGACAACATGGATATTGGACCTAGAGAG 1020 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 GAAACTCTAGTATTCTTCGATCGTTATTAGTAATGCCTGACATTGCGTGCTCGGGAGGAC 1080 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 CTAGGAAATGCAACACCGTTTTCTCCAGATTCATACTTCGGTTATTAGTTCCCACTTCCC 1140 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 AGCCTGCCGCATAAACATGTTTTCCGAAGGAACAACCATCATTTTTACTGATTGGAAGGA 1200 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 TGTCAACACTAGTACAAGCTGGCATGTTGAAAGCTAGAAATTTCACCATCTACTCGCAAG 1260 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 ATTGAAGCCCCACTTTGCAAACACGATTGCATTCCAGGTTAAAGAGTTGTTTGTATTTGT 1320 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 CACTATTAGAGCTTAGAGAATAGGAATAGGAGTGCTCTGTGTTTTGTGTTATTACATTGG 1380 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 ATTGGAATAAGATGTGCTCCTGCCAAGTTAATTATGTTGGCTTGGTTTGAGGTAGCAGTT 1440 consensus_9725#1 ------------------------------------------------------------ consensus_9725#0 AAAATTCATGTGCTGTTTGAACTGATGCACTGATAAGTTTAATTTTCTTGAGTGATC 1497 consensus_9725#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||