These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1181 fasta sequence [TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGAACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCTTGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTTTGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCTTGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCTTGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGCATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATG-TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT-GCCAGGTGACTTG-TTCTGTTCTTGTCGTAAAAATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC] [+] EMBL AK062977 [TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGAACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCTTGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTTTGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCTTGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCTTGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGCATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATG TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT GCCAGGTGACTTG TTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC] [+] EMBL BI803402 [ AGTTAGGTAGGATTTTTGGTGTAATGCTAGCAGATATACCGAGAGAACCGATATG TGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTCCCCCGGTGACTTGCTTCTGTTCTTGTCGTAAAAA ] [+] EMBL BI804350 [ AGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGCTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCT GCCAGGTGACTTG TTCTGTTCTTGTCGTAAAAA ] consensusID : consensus_9735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [TGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAAATAAAAAG] [-] EMBL CB622257 [TGTTGGGCTATCATTAGCACAGATAGGAGAGTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTATCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAAATAAAAAG] consensusID : consensus_9735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [TCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCCTTAAAGGA] [-] EMBL CB622256 [TCTCATTTTCAAACTAATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTATGCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACTCTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATTAACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCAATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTATACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTCTTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAGTTAGGTAGGATTTTTGGTGTAATGCTATCAGATATACCGAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTATGTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAACATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCCTTAAAGGA] consensusID : consensus_9735#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCACATATCGGTTCTCTCGGTATATCTGATAGCATTACACCAAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAAAAAAAAAAAAAAAAAGGGGGGGGCCNCNAT] [+] EMBL OSC30371 [TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCACATATCGGTTCTCTCGGTATATCTGATAGCATTACACCAAGAGAACCGATATGTGCTGATTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAAAAAAAAAAAAAAAAAGGGGGGGGCCNCNAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TTGGTCATTTGTTCCTCGATTCTTGAAACTGATGATTCAGCTATCATCGCAGACAAATGA 60 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 ACTCTATCAGTTGGCTTCTGTTGCTTTCTGCTTGCTGCTAGCCTGGTGTAGTGATTATCT 120 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGGATTGAGTCTTGAACTAGGCTCATTTCTTGCTGGCGTTATGATCTCAACCACAGATTT 180 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGCTCATCATACTTTGGAGCAGGTGGAGCCAATTCGTAACTTATTTGCAGCACTCTTCCT 240 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGCAAGCATCGGCATGCTCATACATGTCAAGTTCTTGTGGAATCATGTTGACATATTGCT 300 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGCAGCTGTTATACTGGTTATAATAGTTAAGAGCGTAGTCGTAACAGTTGTGGTGAAAGC 360 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ------------------------------TGTTGGGCTATCATTAGCACAGATAGGAGA 30 consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 ATTTGGATACAGCATCAGAACAGCTTTTGTTGTTGGGCTATCATTAGCACAGATAGGAGA 420 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 GTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTA 90 consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 GTTTGCATTTGTGCTTCTTAGCCGTGCTTCGCATCTTCATCTTGTTGGGGGAAAAATGTA 480 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 TCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACT 150 consensus_9735#2 ---------------------------------------------TCTCATTTTCAAACT 15 consensus_9735#0 TCTATTATTACTGGGAACAACTGCACTTAGCTTGGTTACAACTCCTCTCATTTTCAAACT 540 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 210 consensus_9735#2 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 75 consensus_9735#0 AATTCCTGTGGTAATGCACCTTGGTATTCTTATGCGCTGGTTCCCCTCGGAAAGCAGTAT 600 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 GCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 270 consensus_9735#2 GCAGAATGAGCTAGCTTTACAGGATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 135 consensus_9735#0 GCAGAATGAG------------GATAAAGCAACCATGCTTGAAGCCTACAACAGATCACT 648 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 330 consensus_9735#2 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 195 consensus_9735#0 CTAACATTACAAAGCCACAGACATTCATTCATTTGACTGACAATGATTTATTCGTGCATT 708 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 390 consensus_9735#2 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 255 consensus_9735#0 AACTCTTTGCACATGCCGTGGAACATTGGACAGACAATTCCATCATTTCTTTTTGCGGCA 768 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 450 consensus_9735#2 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 315 consensus_9735#0 ATACGTCTACACAAGCGATGACTAAAGACACAGTTTGACAGGCCGGGGATCTGTTGGTAT 828 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 510 consensus_9735#2 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 375 consensus_9735#0 ACCATTTAAGTTGAAAAATTGAGTTGTACATACTGTACATGTTGTCAGCGTAGCATATTC 888 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 570 consensus_9735#2 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 435 consensus_9735#0 TTTAGACTGTAAGGCCCCAAGCCTTGGTTTTGTATCATCCCTGCCAACTCAACCTAGGAG 948 consensus_9735#3 -----------------------TAGGTAGGATTTTNGGTCTTCTGATGGGGAATCAGCA 37 * *** * * ** * * * * consensus_9735#1 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 629 consensus_9735#2 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 494 consensus_9735#0 TTAGGTAGGATTTTTGGTGTAA-TGCTATCAGATATACCGAGAGAACCGATATGTGCTGA 1007 consensus_9735#3 CATATCGGTTCTCTCGGTATATCTGATAGCAT-TACACCAAGAGAACCGATATGTGCTGA 96 * * * *** ** ** ** ** ** *** ******************** consensus_9735#1 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 689 consensus_9735#2 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 554 consensus_9735#0 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAT 1067 consensus_9735#3 TTCCCCATCAGAAGACCATGGGAAAGCTCTATGTTAGTATATATTGTCCATTTGTCCTAA 156 *********************************************************** consensus_9735#1 GTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAAC 749 consensus_9735#2 GTATGAGCTGCCAGGGGACTTGTTCTGTTCTTGTCGTATGGATAAACATTTTGTCACAAC 614 consensus_9735#0 GTATGAGCTGCCAGGTGACTTGTTCTGTTCTTGTCGTAAAAATAAACATTTTGTCACAAC 1127 consensus_9735#3 AAAAAAAAAAAAAAAGGGGGGGGCCNCNAT------------------------------ 186 * * * * * * consensus_9735#1 ATTCTCTTGTCCTAGTATGAGCTACCAGGGGAAAGTAGCAGCATTTTATTCTCCCGTAAA 809 consensus_9735#2 ATTCTCTTGTCCTAGTATGAGCTTCCAGGGGAAAGTAGCAGCATTTTATTCTCCCGGGCC 674 consensus_9735#0 ATTCTCTTGTCCTAGTATGAGCTACCATTGGAAAGTAGCAGCATTTTATTCTCC------ 1181 consensus_9735#3 ------------------------------------------------------------ consensus_9735#1 ATAAAAAG 817 consensus_9735#2 TTAAAGGA 682 consensus_9735#0 -------- consensus_9735#3 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||