These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1532 fasta sequence [CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAACTGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCCCCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC-TTTTTCGTTTCGTTTGA-AA-CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA-TTTACA-TCACCA-TTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAAGTGTGTGAGCTATTCTGCCTTTTATACTTCTCCTGGCGAGCG] [+] EMBL AK101802 [CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAACTGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCCCCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC TTTTTCGTTTCGTTTGA AA CCATGCAGCATGTAACATGGATGTCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA TTTACA TCACCA TTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAATTGTGTGTGAGCTATTCTGCCTTTTATACTTCTCCTGGCGAGCG] [+] EMBL CB619775 [ CCACCCCCTCGAAGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAG GCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTGCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGA ] [-] EMBL CB619776 [ CAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTTTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATAAAAAAAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC TTTTTCGTTTCGTTTGA AA CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA TTTACA TCACCA TTATGGTGTCGTTTTGTGGCTCACCATTCATAAGATGTTGGGATAACAGAAATTTGTAAT ] [+] EMBL BI804190 [ CTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTTCGTTTCGTTTGA AACCCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACCAACGGGGATGAA TTTACA TCACCACTTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACCAAAAa ] [+] EMBL BI804318 [ TTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTTCGTTTCGTTTGACAA CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAAGTTTACAGTCACCA TGGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAA ] consensusID : consensus_9737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence [AGACAAGGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGCTATTCTGCCTTTAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761165 [AGACAAGGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGCTATTCTGCCTTTAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9737#0 CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGT 60 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGC 120 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTC 180 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 CACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTT 240 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 CGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCG 300 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 GAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCT 360 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 ACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATT 420 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 GATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGT 480 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 GCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATAT 540 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 CCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGC 600 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 CATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGC 660 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAAC 720 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 AGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAAC 780 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCC 840 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 CCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCA 900 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 AATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACT 960 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACT 1020 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 GTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAG 1080 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAG 1140 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 ACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGA 1200 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 ATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCA 1260 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 TACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTCGTTTCGTTTGAAACCAT 1320 consensus_9737#1 ------------------------------------------------------------ consensus_9737#0 GCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGA 1380 consensus_9737#1 -----------------------------------------------------------A 1 * consensus_9737#0 TACAAACGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATA 1440 consensus_9737#1 GACAAG-GGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATA 60 **** ***************************************************** consensus_9737#0 AGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAAGTGTGTGAGC 1500 consensus_9737#1 AGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGC 120 *********************************************** ********** consensus_9737#0 TATTCTGCCTTTTATACTTCTCCTGGCGAGCG 1532 consensus_9737#1 TATTCTGCCTTTAAAAAAAAAAAAAAAAAAA- 151 ************ * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||