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Oryza sativa
cluster # 9740 cluster # 9740       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9740#0 length = 2458 sequences # 5  
consensus_9740#1 length = 578 sequences # 1  

consensusID : consensus_9740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2458
fasta sequence
                              [TTCCGTTTTTTTTCCCCTCTCTCTCCTCTTCGCCGCCCGCGGCGCGCCTTCCAGAACCTTCCAGAAGCTTCCTCCCGCCCCGATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGCGGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGCCCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGCTGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCAGCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCGAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGAGTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACTCAAAGATCTGAAGATGGAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATACTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGATATTGGTGAAATTAAACAATTTTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACTGCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGTCTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGAAGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATAGATGCCTGTGTTCTAATGGCACAAGAAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAATTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGTCCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTGCCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAAT-CA-AGGATCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATA-GCCCAGCTTCATGTTTTCCA-CGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCA-GGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTT-TTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTTACTGCAACGAGAATGCTTTTGCAGTGACAAGGTATCTAGGAGCAGTCATTTTTCTCACATCGGAGCTGCCCTCAAGTTTCAGCCATGTAGTGCAATGTCCGTTTATTGTACAATTAGCAACTGGGAAAAGGGGGTGAAGTTGACTTCACTTCATTGACGATGCTGAAACTTGAAAAGA]

[+] EMBL AK064934             [TTCCGTTTTTTTTCCCCTCTCTCTCCTCTTCGCCGCCCGCGGCGCGCCTTCCAGAACCTTCCAGAAGCTTCCTCCCGCCCCGATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGCGGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGCCCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGCTGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCAGCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCGAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGAGTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACTCAAAGATCTGAAGATGGAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATACTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGATATTGGTGAAATTAAACAATTTTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACTGCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGTCTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGAAGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATAGATGCCTGTGTTCTAATGGCACAAGAAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAATTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGTCCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTGCCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAAT CA AGGATCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATA GCCCAGCTTCATGTTTTCCA CGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCA GGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTT TTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTTACTGCAACGAGAATGCTTTTGCAGTGACAAGGTATCTAGGAGCAGTCATTTTTCTCACATCGGAGCTGCCCTCAAGTTTCAGCCATGTAGTGCAATGTCCGTTTATTGTACAATTAGCAACTGGGAAAAGGGGGTGAAGTTGACTTCACTTCATTGACGATGCTGAAACTTGAAAAGA]
[+] EMBL AK064932             [TTCCGTTTTTTTTCCCCTCTCTCTCCTCTTCGCCGCCCGCGGCGCGCCTTCCAGAACCTTCCAGAAGCTTCCTCCCGCCCCGATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGCGGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGCCCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGCTGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCAGCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCGAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGAGTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACTCAAAGATCTGAAGATGGAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATACTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGATATTGGTGAAATTAAACAATTTTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACTGCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGTCTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGAAGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATAGATGCCTGTGTTCTAATGGCACAAGAAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAATTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGTCCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTGCCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAAT CA AGGATCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATA GCCCAGCTTCATGTTTTCCA CGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCA GGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTT TTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTTACTGCAACGAGAATGCTTTTGCAGTGACAAGGTATCTAGGAGCAGT                                                                                                                                    ]
[+] EMBL CB670046             [                                                                                                                                                                                                                                                                   GCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCAGCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCAAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C28918               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgngcGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGNGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCNGAAACTGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BI804922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTAATCCAGAGGATCTTCATCCCAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATATGCCCAGCTTCATGTTTTCCACCGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCCAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTCCGGTTTAGAAATAAGGTATTGGCTCCACGGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACCGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTCTTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTTACTGCAACGAGAATGCTTTTGCAGTGACCAGGTAaaaaaaaaa                                                                                                                                       ]


>consensus_9740#0 TTCCGTTTTTTTTCCCCTCTCTCTCCTCTTCGCCGCCCGCGGCGCGCCTTCCAGAACCTT CCAGAAGCTTCCTCCCGCCCCGATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGC GGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGC CCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGC TGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGC TGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGA ATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACC GTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCA GCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGA AAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAA TGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGA TGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAA CGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGG GAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCGAGGT TGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATAT AGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCC CAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGA GTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACT CAAAGATCTGAAGATGGAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATA CTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGATATTGGTGAAATTAAACAATT TTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACT GCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGT CTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGA AGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATAGATGCCTGTGTTCTAATGG CACAAGAAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAA TTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGT CCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGA TTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAA AATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATC ACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTG CCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAATCAAGGA TCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATAGCCCAGCTTCATG TTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGT GTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGG GTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCAT ATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAA CAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTTTTTT CTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTT ACTGCAACGAGAATGCTTTTGCAGTGACAAGGTATCTAGGAGCAGTCATTTTTCTCACAT CGGAGCTGCCCTCAAGTTTCAGCCATGTAGTGCAATGTCCGTTTATTGTACAATTAGCAA CTGGGAAAAGGGGGTGAAGTTGACTTCACTTCATTGACGATGCTGAAACTTGAAAAGA



consensusID : consensus_9740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence
                              [CAAGAGATCCTTTTGTGCCTTGTGGATCAGATAATACATCCAGGCGAAAATGTGACCATTGATGACTTAATCAAGGATCTTCATCCAAAGGTAATGCTAGGTATCCCTTTGTTGGAAGGGAATAGCCCAGCTTCATGTTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTCCAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTCCCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTTTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCACCCTTTTACTGCAACGAGAATGCTTTTGCAGTGCCAAGTTTTAAGGGAGCAGTCATTTTTCTCAAAAAAAAAAAAACCCTAAAAGGAA]

[-] EMBL CB670047             [CAAGAGATCCTTTTGTGCCTTGTGGATCAGATAATACATCCAGGCGAAAATGTGACCATTGATGACTTAATCAAGGATCTTCATCCAAAGGTAATGCTAGGTATCCCTTTGTTGGAAGGGAATAGCCCAGCTTCATGTTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTCCAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTCCCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTTTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCACCCTTTTACTGCAACGAGAATGCTTTTGCAGTGCCAAGTTTTAAGGGAGCAGTCATTTTTCTCAAAAAAAAAAAAACCCTAAAAGGAA]


>consensus_9740#1 CAAGAGATCCTTTTGTGCCTTGTGGATCAGATAATACATCCAGGCGAAAATGTGACCATT GATGACTTAATCAAGGATCTTCATCCAAAGGTAATGCTAGGTATCCCTTTGTTGGAAGGG AATAGCCCAGCTTCATGTTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTCCAGT TACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTG CTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAA AATCCCCTTGATATCATATCTGACTCCCTTGGACGAGAACCATCATTGCAAGCTTTCATT CAGAGCCGAACGAGGAACAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTG TTGAATTATTTTTTTTTCTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTT CGTTTGTTCACCCTTTTACTGCAACGAGAATGCTTTTGCAGTGCCAAGTTTTAAGGGAGC AGTCATTTTTCTCAAAAAAAAAAAAACCCTAAAAGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9740#0      TTCCGTTTTTTTTCCCCTCTCTCTCCTCTTCGCCGCCCGCGGCGCGCCTTCCAGAACCTT 60
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CCAGAAGCTTCCTCCCGCCCCGATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGC 120
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGC 180
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGC 240
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGC 300
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGA 360
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      ATTAGATGCTCAGCAGTTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACC 420
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATTGGATTCTCACTTCCA 480
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGA 540
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      AAGAATAGGCCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAA 600
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGA 660
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAA 720
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGG 780
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GAAGTGGAAGGTTCTGCTGACCAGTTATCATGTTACTCCAATTCTTGAGCATTGCGAGGT 840
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATAT 900
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      AGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCC 960
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGA 1020
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACT 1080
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CAAAGATCTGAAGATGGAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATA 1140
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGATATTGGTGAAATTAAACAATT 1200
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACT 1260
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      GCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGT 1320
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGA 1380
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      AGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATAGATGCCTGTGTTCTAATGG 1440
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CACAAGAAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAA 1500
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGT 1560
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      CCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGA 1620
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      TTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAA 1680
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      AATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATC 1740
consensus_9740#1      ------------------------------------------------------------
                                                                                  

consensus_9740#0      ACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTG 1800
consensus_9740#1      -------------------------------------------CAAGAGATCCTTTTGTG 17
                                                                 *****************

consensus_9740#0      CCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAATCAAGGA 1860
consensus_9740#1      CCTTGTGGATCAGATAATACATCCAGGCGAAAATGTGACCATTGATGACTTAATCAAGGA 77
                      ****** *************** *************** *********************

consensus_9740#0      TCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATAGCCCAGCTTCATG 1920
consensus_9740#1      TCTTCATCCAAAGGTAATGCTAGGTATCCCTTTGTTGGAAGGGAATAGCCCAGCTTCATG 137
                      *************************** ********************************

consensus_9740#0      TTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGT 1980
consensus_9740#1      TTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTCCAGTTACATATGGAGTGAGGT 197
                      ************************************** *********************

consensus_9740#0      GTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGG 2040
consensus_9740#1      GTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGG 257
                      ************************************************************

consensus_9740#0      GTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCAT 2100
consensus_9740#1      GTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCAT 317
                      ************************************************************

consensus_9740#0      ATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAA 2160
consensus_9740#1      ATCTGACTCCCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAGCCGAACGAGGAA 377
                      ******** ***************************************************

consensus_9740#0      CAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTTTTTT 2220
consensus_9740#1      CAGTCTGTGAAAGATCGTGTAACCCTTGAAGGTTTAATTAGTGTTGAATTATTTTTTTTT 437
                      ************************************************************

consensus_9740#0      CTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCAACCTTTT 2280
consensus_9740#1      CTCTGAGGGAATAGTTAGTGCTGAGATCTGATTATGATCTGTTCGTTTGTTCACCCTTTT 497
                      ***************************************************** ******

consensus_9740#0      ACTGCAACGAGAATGCTTTTGCAGTGACAAGGTATCTAGGAGCAGTCATTTTTCTCACAT 2340
consensus_9740#1      ACTGCAACGAGAATGCTTTTGCAGTGCCAAGTTTTAAGGGAGCAGTCATTTTTCTCAAAA 557
                      ************************** **** * *   ******************* * 

consensus_9740#0      CGGAGCTGCCCTCAAGTTTCAGCCATGTAGTGCAATGTCCGTTTATTGTACAATTAGCAA 2400
consensus_9740#1      AAAAAAAAACCCTAAAAGGAA--------------------------------------- 578
                         *     **  **     *                                       

consensus_9740#0      CTGGGAAAAGGGGGTGAAGTTGACTTCACTTCATTGACGATGCTGAAACTTGAAAAGA 2458
consensus_9740#1      ----------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)