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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1616 fasta sequence
[GCCTTCTTCAGTCCGCGGCGTTGTTCCAGAAGCTTCTGGAAAGTCGGGGAAACCCCCATGGCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCGGACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCGCCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATCGGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCCGTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGATAACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTATCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAACTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTACAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCAAATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTGAAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAAGAATGTATTGCACTAGAGGAACTATACCTCAGTCATAATGGAATACAAAAGATGGAGGGTCTCTCTACCTTGCAGAACCTTCGTGTTTTAGATGTTTCATCCAACAAGCTAACTGCTATCGAAGATGTTGAAACCTTAAGCAGGTTGGAGGACTTGTGGTTGAATGACAACCAAATACCATCACTAGATGGGATAGAATCTGCTTTGGCTAGTTCACGGGAGAAGCTGACTACCATATATCTTGAGCGGAATCCTTGCGCAAAAGCTCCAAACTATTCATCCACGTTGAA-GACA-ATA--TTTCCAAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACATTATTGTGCTCAATATCTAAATTGCTTCACC-TTTTTTTCCTGCTCCAT-GTTCTGATGCTGTTACTGGATGGATCATC-GTGGGCTTGTC-TTTGTCAAACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTAGCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCATTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTCTGAGA-TTGATTCAAGTTTATGAAAGCAGCACACATTTGAATGTTTATGGCTTAACTTATAAGCATGTGCAACCGTTCCGGTTATTCTGGTTGCTGTCATATGCAGTAAAGTTTTATTCATGA]
[+] EMBL AK101441 [GCCTTCTTCAGTCCGCGGCGTTGTTCCAGAAGCTTCTGGAAAGTCGGGGAAACCCCCATGGCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCGGACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCGCCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATCGGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCCGTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGATAACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTATCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAACTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTACAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCAAATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTGAAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAAGAATGTATTGCACTAGAGGAACTATACCTCAGTCATAATGGAATACAAAAGATGGAGGGTCTCTCTACCTTGCAGAACCTTCGTGTTTTAGATGTTTCATCCAACAAGCTAACTGCTATCGAAGATGTTGAAACCTTAAGCAGGTTGGAGGACTTGTGGTTGAATGACAACCAAATACCATCACTAGATGGGATAGAATCTGCTTTGGCTAGTTCACGGGAGAAGCTGACTACCATATATCTTGAGCGGAATCCTTGCGCAAAAGCTCCAAACTATTCATCCACGTTGAA GACA ATA TTTCCAAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACATTATTGTGCTCAATATCTAAATTGCTTCACC TTTTTTTCCTGCTCCAT GTTCTGATGCTGTTACTGGATGGATCATC GTGGGCTTGTC TTTGTCAAACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTAGCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCATTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTCTGAGA TTGATTCAAGTTTATGAAAGCAGCACACATTTGAATGTTTATGGCTTAACTTATAAGCATGTGCAACCGTTCCGGTTATTCTGGTTGCTGTCATATGCAGTAAAGTTTTATTCATGA]
[+] EMBL CA766291 [ AAAGATGGAGGAACTCGAACACTTTCATGCATTACAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCAAATCTGCAAGAGCTATGGCTGGGAAGAAATCGAATCAAGACAATCAACCTATGTGGTTTGAAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAAGAATGTATTGCACTAGAGGAACTATACCTCAGTCATAATGGAATACAAAAGATGGAGGGTCTCTCTACCTTGCAGAACCTTCGTGTTTTAGATGTTTCATCCAACAAGCTAACTGCTATCGAAGATGTTGAAACCTTAAGCAGGTTGGAGGACTTGTGGTTGAATGACAACCAAATACCATCACTAGATGGGATAGAATCTGCTTTGGCTAGTTCACGGGAGAAGCTGACTACCATATATCTTGAGCGGAATCCTTGCGCAAAAGCTCCAAACTATTCATCCACGTTGAA GACA ATA TTTCCAAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACATTATTGNGCTCAATATCTAAATTGCTTCACCTTTTTTTTCCTGCTCCATGGTTCTGATGCTGGTACTGGATGGATCATCGGGGGGCTTGTCNTTTGTCAAA ]
[-] EMBL CB651725 [ GGAATACAAAAGATGGAGGGTCTCTCTACCTTGCAGAACCTTCGTGTTTTAGATGTTTCATCCAACAAGCTAACTGCTATCGAAGATGTTGAAACCTTAAGCAGGTTGGAGGACTTGTGGTTGAATGACAACCAAATACCATCACTAGATGGGATAGAATCTGCTTTGGCTAGTTCACGGGAGAAGCTGACTACCATATATCTTGAGCGGAATCCTTGCGCAAAAGCTCCAAACTATTCATCCACGTTGAA GACA ATA TTTCCAAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACATTATTGTGCTCAATATCTAAATTGCTTCACC TTTTTTTCCTGCTCCAT GTTTTGATGCTGTTACTGGATGGATCATC GTGGGCTTGTC TTTGTCAAACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTAGCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCATTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTCTGAGA TTGATTCAAGTTTATGAAAGCAGCACACAT ]
[+] EMBL BI810082 [ cgTATTCATCCACGTTGAACGACACATATGTTTCCCAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACATTATTGTGCTCAATATCTAAATTGCTTCACC TTTTTTTCCTGCTCCAT GTTCTGATGCTGTTACTGGATGGATCATC GTGGGCTTGTC TCTGTCAAACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTAGCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCATTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTTTGAGATTTGATTCAAaaa ]
[+] EMBL D42708 [ ACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTAGCAAACTGATGTTTTTCACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCATTTGATATTACCTGTACTATGTTGACATGTNTGCTATTGC TTTGCTGT ]
consensusID : consensus_9752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence
[CGGGGAAACCCCCATGGCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCGGACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCGCCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATCGGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCCGTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGATAACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTATCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAACTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTACAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCAAATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTGAAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAAGTACTGTGACATTACTTTCTCTCATCCCCTGATTTTCTTGTGAAGCGCTACTTGATAACCAGTCCATTGTTCTCTTATTCANGAATGTATTGCACTAGAGGAACTATACCTCAGTCA]
[+] EMBL CB651724 [CGGGGAAACCCCCATGGCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCGGACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCGCCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATCGGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCCGTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGATAACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTATCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAACTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTACAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCAAATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTGAAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAAGTACTGTGACATTACTTTCTCTCATCCCCTGATTTTCTTGTGAAGCGCTACTTGATAACCAGTCCATTGTTCTCTTATTCANGAATGTATTGCACTAGAGGAACTATACCTCAGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9752#0 GCCTTCTTCAGTCCGCGGCGTTGTTCCAGAAGCTTCTGGAAAGTCGGGGAAACCCCCATG 60
consensus_9752#1 --------------------------------------------CGGGGAAACCCCCATG 16
****************
consensus_9752#0 GCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCG 120
consensus_9752#1 GCGTCCGGCGATCCGGTGGACGCGCCGGCGGCGGCGGCGGAGTCGATGGAGGTGGAGGCG 76
************************************************************
consensus_9752#0 GACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCG 180
consensus_9752#1 GACCAGTGCCTCGACCTGACGAGCTGCCAGCTGCACGATCTGAGCGAGGTGGAGATCCCG 136
************************************************************
consensus_9752#0 CCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATC 240
consensus_9752#1 CCCACCCTGGAGGAGCTCGAACTCACGGCGAACCGCCTCGCCGCCGTCGACCCCCGCATC 196
************************************************************
consensus_9752#0 GGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCC 300
consensus_9752#1 GGCCGCCTCCCGGGCCTCCGCAAGCTCTCCTTCCGCCAGAACCTCCTCGACGACGCCGCC 256
************************************************************
consensus_9752#0 GTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGAT 360
consensus_9752#1 GTCGCGCCCCTCTCCACCTGGGCCGACATCGCTGGGCTGCAGGAGTTGGTCTTTAGAGAT 316
************************************************************
consensus_9752#0 AACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTA 420
consensus_9752#1 AACAAACTTACAACGATTCCTGATGCCAGCATCTTCAAAGGCCTTCTGGTCTTTGATGTA 376
************************************************************
consensus_9752#0 TCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAA 480
consensus_9752#1 TCTTTCAATGAGATATCTTCCTTAAAGGGGCTGTCCAAGGTTTCCAGCACACTGAAGGAA 436
************************************************************
consensus_9752#0 CTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTA 540
consensus_9752#1 CTCTATGTTTCAAAGAATGAAGTTGCAAAGATGGAGGAACTCGAACACTTTCATGCATTA 496
************************************************************
consensus_9752#0 CAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCA 600
consensus_9752#1 CAAATTCTTGAACTTGGTAGCAACAGATTGAGGGTGATGGAAAATCTAGAAACCTTGGCA 556
************************************************************
consensus_9752#0 AATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTG 660
consensus_9752#1 AATCTGCAGGAGCTATGGCTGGGAAGAAATCGAATAAAGACAATCAACCTATGTAGTTTG 616
************************************************************
consensus_9752#0 AAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAA 720
consensus_9752#1 AAAGCAATAAAAAAATTAAGCTTGCAAAGCAACAGACTGACTTCAATGAATGGGTTACAA 676
************************************************************
consensus_9752#0 GAATGTATTGCACTAGAGGAACT-ATACCTCAGTCATAATGGAATACAAAAGATGGAGGG 779
consensus_9752#1 GTAC-TGTGACATTACTTTCTCTCATCCCCTGATTTTCTTGTGAAGCGCTAC-TTGATAA 734
* * * * ** ** ** ** ** * * ** * * * * **
consensus_9752#0 TCTCTCTACCTTGCAGAACCTTCGTGTTTTAGATGTTTCATCCAACAAGCTA-ACTGCTA 838
consensus_9752#1 CCAGTCCATTGTTC----TCTTATTCANGAATGTATTGCACTAGAGGAACTATACCTCAG 790
* ** * * * *** * * * ** ** * * *** ** *
consensus_9752#0 TCGAAGATGTTGAAACCTTAAGCAGGTTGGAGGACTTGTGGTTGAATGACAACCAAATAC 898
consensus_9752#1 TCA--------------------------------------------------------- 793
**
consensus_9752#0 CATCACTAGATGGGATAGAATCTGCTTTGGCTAGTTCACGGGAGAAGCTGACTACCATAT 958
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 ATCTTGAGCGGAATCCTTGCGCAAAAGCTCCAAACTATTCATCCACGTTGAAGACAATAT 1018
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 TTCCAAATCTTGAGCAACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGA 1078
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 AGATAGGGAAGACACTCCTGGAGTAGCTCTACTAGCGTTGTTTTTTCTAACAATCAAAGC 1138
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 GTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATGCAACA 1198
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 TTATTGTGCTCAATATCTAAATTGCTTCACCTTTTTTTCCTGCTCCATGTTCTGATGCTG 1258
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 TTACTGGATGGATCATCGTGGGCTTGTCTTTGTCAAACTATACTCCCATATACAGAGATC 1318
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 AAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGGACTGAATGATAAACCAATAAAACCTA 1378
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 GCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGATGTTGCA 1438
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 TTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTCTGAG 1498
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 ATTGATTCAAGTTTATGAAAGCAGCACACATTTGAATGTTTATGGCTTAACTTATAAGCA 1558
consensus_9752#1 ------------------------------------------------------------
consensus_9752#0 TGTGCAACCGTTCCGGTTATTCTGGTTGCTGTCATATGCAGTAAAGTTTTATTCATGA 1616
consensus_9752#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||