These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 601 fasta sequence [AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAAGGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAAATTTTGCCCCC] [+] EMBL CA765157 [AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAAGGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGNTCTTTTCTAATGCAAAAAATTTTGCCCCC] [-] EMBL CB638111 [ AGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTTGCACTCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCTTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGTTGATGATCGCAAAGTTCCTTGCCTTTGCCAAACGGCTAATTGTGGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTAAAAG AATTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGAAAATGCTTTCCCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGTTTCCATCCCTGTAAATGGCA ] [+] EMBL AK062870 [ ATGACGAGAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA ] [+] EMBL CB097157 [ GAGCCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCAAACGGCTAATTGTCGTAAATTCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA ] [+] EMBL CA758148 [ TCATGAATTAGTTTACTGTAGATGTCAAATTGGCCATTAGTTTACTGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGCTGGTGGTATATGCTTTACCTTGTTCTTTGTTGCTTCCCCATTCTTTAACATAGCATTTAGAAAATAAGTTTAGCTATAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAA ] consensusID : consensus_9757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCTGCACGCCAAACTGCTATCAAGGATTATGATTGTGGGCATGACGAGACCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAATTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGGTTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATGCTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCATGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGA] [+] EMBL BI811389 [CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCTGCACGCCAAACTGCTATCAAGGATTATGATTGTGGGCATGACGAGACCGTATTGTCCTAATCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTGACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAATTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGGTTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATGCTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCATGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTAAATGGCACTAATTTATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9757#0 AAGGAGAAATGGTGCTCGAGTATAGAGGTGAGCAGGTCAGACGAAGTGTTGCTGATTTAA 60 consensus_9757#1 ------------------------------------------------------------ consensus_9757#0 GGGAAGAGCAATATCGTGTACAAGGCAAAGATTGTTATCTTTTCAAAATCAGCGAGGAAG 120 consensus_9757#1 ------------------------------------------------------------ consensus_9757#0 TAGTCGTTGATGCCACAGATAAA--GGAAACGTGGCACG-CTTGATTAATCATTCTTGCA 177 consensus_9757#1 ----CTTGGAACCCACAGATAAAAGGGAACCGTGGCACCTCTTGATTAATCATTCT-GCA 55 * * ** *********** **** ******** **************** *** consensus_9757#0 CGCCAAACTGCTATGCAAGGATTATGAGTGTGGGGCATGACGAGAGCCGTATTGTCCTAA 237 consensus_9757#1 CGCCAAACTGCTAT-CAAGGATTATGATTGTGGG-CATGACGAGA-CCGTATTGTCCTAA 112 ************** ************ ****** ********** ************** consensus_9757#0 TCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTG 297 consensus_9757#1 TCGCCAAGAAAAATGTCTCTGCCGGCGAAGAGCTAACGTATGACTACTTATTTGACCCTG 172 ************************************************************ consensus_9757#0 ACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCA-AACGGCTAATTGTCGT---AAA 353 consensus_9757#1 ACGAGGCTGATGATCGCAAAGTTCCTTGCCTCTGCCACAACGGCTAATTGGTGCGTGAAA 232 ************************************* ************ * *** consensus_9757#0 TT-CATGAATT--AGTTTACTGTAGATGT----CAAATTGG-CCATT-AGT-TTAC---- 399 consensus_9757#1 TTGCATGGAATTGAGTTTACTGGTGAGATGGTGCAAATTGGGCCATTGAGTGTTACCTGG 292 ** **** * * ********* ** * ******** ***** *** **** consensus_9757#0 -------TGTTCTTTCTTTCTTTCTTTCTTTTTTCTGGGTTGGC-TGGTGGTATATG--- 448 consensus_9757#1 TTGCTTGTGCTGTTGCTTTGCTGTGTGCTTTTTTCTGGGTTGGCCTGGTGGGTAATGATG 352 ** * ** **** * * ***************** ****** *** consensus_9757#0 --------CTTTACCTTGTTCTT--TGTTGCTT--CCCCAT----TCTTTAACAT-AGCA 491 consensus_9757#1 CTGTTGACCCTTGGTGTGCTGTTGGTGTGGCTGTGCCCCATGTGCTGTTGAACATGAGCA 412 * ** ** * ** *** *** ****** * ** ***** **** consensus_9757#0 TTT---AGAAAATAAG---TTTAGCTAT--AGCTCAGAAGCGCGAGCTTCCATCCCTGTA 543 consensus_9757#1 TGTTGAGGAAAATAAAAGTTGTAGCTGATGAGCTCAGAAGCGCGAGCTTCCATCCCTGTA 472 * * ******** * ***** ****************************** consensus_9757#0 AATGGCACTAATTTATCGATTACAGTCGTTCTTTTCTAATGCAAAAAATTTTGCCCCC 601 consensus_9757#1 AATGGCACTAATTTATCGA--------------------------------------- 491 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||