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Oryza sativa
cluster # 9770 cluster # 9770       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9770#0 length = 2103 sequences # 6  

consensusID : consensus_9770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2103
fasta sequence
                              [TCACACCACACGCCTCGCATCGCATCCCCACCTCCGCCGATCCCGCCGTCTCCGGCCATCTCCGCCGCCGGCAGCCACCACCACCTCCTCCTCTTCCCCTCTCCCCCTTCCGCCCAATTGGTTGCCCCGACCAAACCCTACACGCGGAAGGGCTCGCTCGCTCGATCCGGTGCGGGCAGCGCGCGCGCGGGGCTCGACGCGGGCGGCGACGGGGGGCGGGCTCGATCCGGCGGAGCAGTGGGCGCTCTCTTCCACGATGCGTCTACCCTCTTCGCGCGAGCACGACAAGGTTCTTTTTGCGGGGTCAACAATAATGAGGAGAATTTGAGTTGGTCTGGAATTACTCTGGGATGTTATCATTGGCGAAAAGTATAGATCCCTTTTGGTAGCTGAGGAGAGATCTCAATTTTTTCAGAGAGTAGATGTCGTTTCGCAGCATCGTGCGCGATGTGAGGGATGGATTTGGGAGCCTATCGAGGAGGGGATTTGAGGTCAGGATTCTGGGGCATCGCAGGGGGAAGTCTCATGGTGCTGTCCATGAGTTGCATGACCCGGTGCCTGTAATCCAGAGCAGCTGCTGGGCTAGCTTGCCTCCGGAATTGCTTCGTGATATCATTGAGAGGTTGGAAGAAAGTGAGGCTACATGGCCTTCTAGGAAGCATGTGGTTGCTTGTGCGGGTGTCTGCAGAACATGGAGGGAGATGTGTAAAGAGATCGTCAAGAATCCAGAGTTGTGTGGGAAGATCACCTTCCCTATTTCTCTG----AGCCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGCTGTGCTTGTTGACAATGGCAAATTCCTTCTATCAGCAAAAAGAAACTGGCATGCAACATGTACAGAATATGTGATATCTATGAATGCTAACAATTTATCTAGGTCTACCAACACAAACATTGGAAAATTGAGGTCAAACTTCCTTGGCACAAAGTTTGTAATATATGATACCCACACTCCGTACAATGCAACTAGTGATTCACAGTCAGGGAAAACAAGCCGAAGATTCTCCAACAAGGGAACAGCAAAGCATCCCTGCAGCACATATAGCATAGCAAACATCTCATATGAGCTAAACGTCTTTGGAACTCGGGGTCCTAGGCGGATGTGCTGTTTAATGCACTCCATCCCTGCCTCATCTCTTGAGGCTGGT-GGGACTGTTCCTAGCCAGCCGGATAGCATCCTTGCCCATTCCCTCAATGAATCCTCCTTT-AGGAGTGTCTCCTTTTCGAAATCGTCCGTTATGGACCATTCCATGCATTTCAGCAGTGCTCAGTTCTCTGACATCTCAATTGGAGATGGCCCAAGGATTGGGGG-CCGGGTATTGAGCGATGA-TGAGGAGTGCAAGGAGACACCTTTGATTCTCCAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCTTAAACTTCCGGGGCCGGGTAACTGTTGCTTCTGTCAAGAACTTCCAGCTCATCGC-AGCCACGCAGCCTGCTGCGGGAGCCCCAACTCCA-TCACA-GCCTGTTCCACCACCCCCACCA-GAGCATGATAAGGTCAT-ACTG-CAATTCGGGAAGGTT-GCCA-AGGACATGTTCACCA-TGGATTACCACTACCCGCTCTCAGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCTGGCCT-GCGAATAGAACTTCCAGGCAGG-CCAGAAACATCATGGATGCTTCTTATTTGACG-CCCTGAGGGCATGC-CCCTGGAT-GGAGCTGACCATCCCCA-AGTTTAGCCTGGGAC-CCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCA-AGCAACAAAAGGCA-AATTGTTATTTTAGCA-TTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCAGTGATTTATTAACTGAGAAAGCTAATAATTTGGTGATTCAAAAAAAAAAA]

[+] EMBL AK070139             [TCACACCACACGCCTCGCATCGCATCCCCACCTCCGCCGATCCCGCCGTCTCCGGCCATCTCCGCCGCCGGCAGCCACCACCACCTCCTCCTCTTCCCCTCTCCCCCTTCCGCCCAATTGGTTGCCCCGACCAAACCCTACACGCGGAAGGGCTCGCTCGCTCGATCCGGTGCGGGCAGCGCGCGCGCGGGGCTCGACGCGGGCGGCGACGGGGGGCGGGCTCGATCCGGCGGAGCAGTGGGCGCTCTCTTCCACGATGCGTCTACCCTCTTCGCGCGAGCACGACAAGGTTCTTTTTGCGGGGTCAACAATAATGAGGAGAATTTGAGTTGGTCTGGAATTACTCTGGGATGTTATCATTGGCGAAAAGTATAGATCCCTTTTGGTAGCTGAGGAGAGATCTCAATTTTTTCAGAGAGTAGATGTCGTTTCGCAGCATCGTGCGCGATGTGAGGGATGGATTTGGGAGCCTATCGAGGAGGGGATTTGAGGTCAGGATTCTGGGGCATCGCAGGGGGAAGTCTCATGGTGCTGTCCATGAGTTGCATGACCCGGTGCCTGTAATCCAGAGCAGCTGCTGGGCTAGCTTGCCTCCGGAATTGCTTCGTGATATCATTGAGAGGTTGGAAGAAAGTGAGGCTACATGGCCTTCTAGGAAGCATGTGGTTGCTTGTGCGGGTGTCTGCAGAACATGGAGGGAGATGTGTAAAGAGATCGTCAAGAATCCAGAGTTGTGTGGGAAGATCACCTTCCCTATTTCTCTG    AGCCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGCTGTGCTTGTTGACAATGGCAAATTCCTTCTATCAGCAAAAAGAAACTGGCATGCAACATGTACAGAATATGTGATATCTATGAATGCTAACAATTTATCTAGGTCTACCAACACAAACATTGGAAAATTGAGGTCAAACTTCCTTGGCACAAAGTTTGTAATATATGATACCCACACTCCGTACAATGCAACTAGTGATTCACAGTCAGGGAAAACAAGCCGAAGATTCTCCAACAAGGGAACAGCAAAGCATCCCTGCAGCACATATAGCATAGCAAACATCTCATATGAGCTAAACGTCTTTGGAACTCGGGGTCCTAGGCGGATGTGCTGTTTAATGCACTCCATCCCTGCCTCATCTCTTGAGGCTGGT GGGACTGTTCCTAGCCAGCCGGATAGCATCCTTGCCCATTCCCTCAATGAATCCTCCTTT AGGAGTGTCTCCTTTTCGAAATCGTCCGTTATGGACCATTCCATGCATTTCAGCAGTGCTCAGTTCTCTGACATCTCAATTGGAGATGGCCCAAGGATTGGGGG CCGGGTATTGAGCGATGA TGAGGAGTGCAAGGAGACACCTTTGATTCTCCAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCTTAAACTTCCGGGGCCGGGTAACTGTTGCTTCTGTCAAGAACTTCCAGCTCATCGC AGCCACGCAGCCTGCTGCGGGAGCCCCAACTCCA TCACA GCCTGTTCCACCACCCCCACCA GAGCATGATAAGGTCAT ACTG CAATTCGGGAAGGTT GCCA AGGACATGTTCACCA TGGATTACCACTACCCGCTCTCAGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCTGGCCT GCGAATAGAACTTCCAGGCAGG CCAGAAACATCATGGATGCTTCTTATTTGACG CCCTGAGGGCATGC CCCTGGAT GGAGCTGACCATCCCCA AGTTTAGCCTGGGACGCCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCA AGCAACAAAAGGCA AATTGTTATTTTAGCA TTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCA                                                  ]
[+] EMBL CB096226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGGTGCCTGTAATCCAGAGCAGCTGCTGGGCTAGCTTGCCTCCGGAATTGCTTCGTGATATCATTGAGAGGTTGGAAGAAAGTGAGGCTACATGGCCTTCTAGGAAGCATGTGGTTGCTTGTGCGGGTGTCTGCAGAACATGGAGGGAGATGTGTAAAGAGATCGTCAAGAATCCAGAGTTGTGTGGGAAGATCACCTTCCCTATTTCTCTGAGGCAGCCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGCTGTGCTTGTTGACAATGGCAAATTCCTTCTATCAGCAAAAAGAAACTGGCGTGCAACATGTACAGAATATGTGATATCTATGAATGCTAACAATTTATCTAGGTCTACCAACACAAACATTGGAAAATTGAGGTCAAACTTCCTTGGCACAAAGTTTGTAATATATGATACCCACACTCCGTACAATGCAACTAGTGATTCACAGTCAGGGAAAACAAGCCGAAGATTCTCCAACAAGGGAACAGCAAAGCATCCCTGCAGCACATATAGCATAGCAAACATCTCATATGAGCTAAACGTCTTTGGAACTCGGGGTCCTAGGCGGATGCGCTGNTTAATGCACTCCATCCCTGCCTCATCTCTTGAGGCTGGTGGGGACTGNTCCTAGCCAGCCGGATAGCCTCCTTGCCCATTCCCTTAATGAATCCTNCTTTAAGGAGTGTCTCCTTTTCGAAATCGTCCGNTATGGACCATTCCATGCATTTCAGCAGTACTCAGTTCTCTGACATCTCAATNGGAGATGGNCCAAGGATTGGGGGNCCAGGTNTTGAGCGATGATTAAGGAGTGCCAGGga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB964845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCATTTCATCAGTGCTCAGTTCTCGGACATCTCAATTGGAGATGGCCCAAGGATTGGGGC CCGGGTATTGAGCGATGA TGAGGAGTGCAAGGAGACACCTTTGATTCTCCCAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCTTAAACTTCCGGGGCCGGGTAACTGTTGCTTCTGTCAAGAACTTCCAGCTCATCGC AGCCACGCAGCCTGCTGCGGGAGCCCCAACTCCA TCACA GCCTGTTCCACCACCCCCACCA GAGCATGATAAGGTCAT ACTG CAATTCGGGAAGGTT GCCA AGGACATGTTCACCA TGGATTACCACTACCCGCTCTCAGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCTGGCCT GCGAATAGAACTTCCAGGCAGG CCAGAAACATCATGGATGCTTCTTATTTGACG CCCTGAGGGCATGC CCCTGGAT GGAGCTGACCATCCCCA AGTTTAGCCTGGGACGCCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCA AGCAACAAAAGGCA AATTGTTATTTTAGCA TTTAGCTTATTTATTCTGATTTTGCTTTGTAA TGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGAT                                                                                  ]
[+] EMBL BI812889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCTCATCTCAACCCAC CAG CTGCT C GGACCCCCAACTCCA TCACA GCCTGTTCCACCACCCCCACCACGAGCATGATAAGGTCAT ACT  CAATTCGGGAAGGTT  CCA AGGACATGTTCACCA TGGATTACCGCTACCCGCTCTCAGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCT GCCTGGCGAATAGAACTTCCAGGCAGG CCAGAAACATCATGGATGCTTCTTATTTGACG CCCTGAGGGCATGC TCCTGGATGGGAGCTGACCATCCCCACAGTTTAGCCTGGGAC CCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCACAGCCACCAAAGGCACAATTGTTATTTTAGCACTTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCAGTGATTTATTAACTGAGAAAGCTAATAATTTGGTGATTCAAAAAAAAAA ]
[+] EMBL BI812870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGAGCCCCTACTCCAGTCACATGCCTGTTCCACCACCCCCACCA GAGCATGATAAGGTCATAACTGCCAATTCGGGAAGGTTGGCCACAGGACATGTTCACCACTGGATTACCGCTACCCGCTCTCAGCCTT CAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAA CTGGCCT GCGAATAGAACTTCCAGGCAGGCCCAGAAACATCATGGATGCTTCTTATTTGACGCCCCTGAGGGCATGCTCGCTGGAT GGAGCTGACCATCCCCA AGTTTAGCCTGGGAC CCGTTCT TTGTATGTTACTGATGATGTGTTAACTCAG AACACCCA AGC ACAAAAGGCA AATTGTTATTTTAGCA TTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCAGTGATTTATTAACTGAGAAAGCTAATAATTTGGTGATTCCAAAAAAAAAA]
[+] EMBL BI812824             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGC TCCTGGAT GGA CTGACCATCCCCA AGTTTAGCCTGGGAC CCGTTCTGTTGTATGTTACTGATGATGTGTTAACTCAGAAACACCCA AGC ACCAAAGGCC AATTGTTATTTTAGCA TTTAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCCATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATTTGACTGTTCTCCCGTGATTTATTAACTGAGAAAGCTAATAATTTGGTGATTCAAAAAAAAAA ]


>consensus_9770#0 TCACACCACACGCCTCGCATCGCATCCCCACCTCCGCCGATCCCGCCGTCTCCGGCCATC TCCGCCGCCGGCAGCCACCACCACCTCCTCCTCTTCCCCTCTCCCCCTTCCGCCCAATTG GTTGCCCCGACCAAACCCTACACGCGGAAGGGCTCGCTCGCTCGATCCGGTGCGGGCAGC GCGCGCGCGGGGCTCGACGCGGGCGGCGACGGGGGGCGGGCTCGATCCGGCGGAGCAGTG GGCGCTCTCTTCCACGATGCGTCTACCCTCTTCGCGCGAGCACGACAAGGTTCTTTTTGC GGGGTCAACAATAATGAGGAGAATTTGAGTTGGTCTGGAATTACTCTGGGATGTTATCAT TGGCGAAAAGTATAGATCCCTTTTGGTAGCTGAGGAGAGATCTCAATTTTTTCAGAGAGT AGATGTCGTTTCGCAGCATCGTGCGCGATGTGAGGGATGGATTTGGGAGCCTATCGAGGA GGGGATTTGAGGTCAGGATTCTGGGGCATCGCAGGGGGAAGTCTCATGGTGCTGTCCATG AGTTGCATGACCCGGTGCCTGTAATCCAGAGCAGCTGCTGGGCTAGCTTGCCTCCGGAAT TGCTTCGTGATATCATTGAGAGGTTGGAAGAAAGTGAGGCTACATGGCCTTCTAGGAAGC ATGTGGTTGCTTGTGCGGGTGTCTGCAGAACATGGAGGGAGATGTGTAAAGAGATCGTCA AGAATCCAGAGTTGTGTGGGAAGATCACCTTCCCTATTTCTCTGAGCCTGGGCCACGAGA TGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCT CTCTCTTGGCTCTGCTGTGCTTGTTGACAATGGCAAATTCCTTCTATCAGCAAAAAGAAA CTGGCATGCAACATGTACAGAATATGTGATATCTATGAATGCTAACAATTTATCTAGGTC TACCAACACAAACATTGGAAAATTGAGGTCAAACTTCCTTGGCACAAAGTTTGTAATATA TGATACCCACACTCCGTACAATGCAACTAGTGATTCACAGTCAGGGAAAACAAGCCGAAG ATTCTCCAACAAGGGAACAGCAAAGCATCCCTGCAGCACATATAGCATAGCAAACATCTC ATATGAGCTAAACGTCTTTGGAACTCGGGGTCCTAGGCGGATGTGCTGTTTAATGCACTC CATCCCTGCCTCATCTCTTGAGGCTGGTGGGACTGTTCCTAGCCAGCCGGATAGCATCCT TGCCCATTCCCTCAATGAATCCTCCTTTAGGAGTGTCTCCTTTTCGAAATCGTCCGTTAT GGACCATTCCATGCATTTCAGCAGTGCTCAGTTCTCTGACATCTCAATTGGAGATGGCCC AAGGATTGGGGGCCGGGTATTGAGCGATGATGAGGAGTGCAAGGAGACACCTTTGATTCT CCAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCTTAAACTTCCGGGG CCGGGTAACTGTTGCTTCTGTCAAGAACTTCCAGCTCATCGCAGCCACGCAGCCTGCTGC GGGAGCCCCAACTCCATCACAGCCTGTTCCACCACCCCCACCAGAGCATGATAAGGTCAT ACTGCAATTCGGGAAGGTTGCCAAGGACATGTTCACCATGGATTACCACTACCCGCTCTC AGCCTTCCAGGCATTTGCTATCTCCCTGAGTAGTTTCGACACCAAGCTGGCCTGCGAATA GAACTTCCAGGCAGGCCAGAAACATCATGGATGCTTCTTATTTGACGCCCTGAGGGCATG CCCCTGGATGGAGCTGACCATCCCCAAGTTTAGCCTGGGACCCGTTCTGTTGTATGTTAC TGATGATGTGTTAACTCAGAAACACCCAAGCAACAAAAGGCAAATTGTTATTTTAGCATT TAGCTTATTTATTCTGATTTTGCTTTGTAATTGAATGTTATCTTTATTTCTTTTTGACCC ATAGCTCTCTCTATAACAGGTATTCTGTATGTGCATCGGATAATTTTCGCAGAATTCATT TGACTGTTCTCCAGTGATTTATTAACTGAGAAAGCTAATAATTTGGTGATTCAAAAAAAA AAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)