These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1498 fasta sequence [GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGAC-TTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCATTGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAAAAAGATTGGAAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGTATTTAGTT] [+] EMBL CB664833 [GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCA ] [+] EMBL CB664792 [GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAACGGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAAGAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAGGGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAAGCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACCATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCAACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATGCTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAATCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTAACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGAAACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCTGGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCTTGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGC ] [-] EMBL CB664793 [ AAGGACAGCAAGATACCGATCTTGGACTCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGAC TTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTTTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCATTGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAAAAAGATTGGAAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGTATTTAGTT] [+] EMBL C98473 [ ACAATAGNCTTTCCGAACAGAAACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGATCCAGATAATCACAANCCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCAGCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCCAAAATGACAATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTACAAAAAAAAAA ] [+] EMBL BM418665 [ ccgTGAAATGTTCGTGAAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCAGTATAGGTGGGCCGTTGCGAAAAC ACAGACAAGGTCATGAAATACCATTCTGACGCTAAAAATGCAAACTTTCTGATCAAGGAGGGCGACAAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGC AAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGCC AAATGAC ATTCAGCAATACATAAACTCTGCAGGGGCATGGCCAAATGTAATTCGTCTTCCTATTTTTTTTTTAC AAAAAAAAAGTCGACCGGTTGTTCGAGATTaaaaaaaaa ] consensusID : consensus_9795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [TTTGTAAAATGTTGTCGGTGAAAAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTGGCCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCAACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGCAAAGGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGCCCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCGTCTTCCTATTTTTTGTTTTACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACTTGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGGAAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGTATTTAAAAAAAA] [+] EMBL BM038890 [TTTGTAAAATGTTGTCGGTGAAAAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTGGCCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCAACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCAGCTCAGCAAAGGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGCCCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCGTCTTCCTATTTTTTGTTTTACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACTTGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGGAAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAGAATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGTATTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9795#0 GCCAAAGGAAAATCGGAGAATGATGCTTCAGACCTAATTGAAAAAAGTGAATCAGAGAAC 60 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 GGACCATTACCACAGCAAGTTCAAACTGAAAATACTGACATTTGTAACATTGATACTGAA 120 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 GAATCTTTAAATAGAACAGGCCACTCTGATCTTCGTGCAAGTCCCAGACAAACTATAAAG 180 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 GGTGAAACAGGTGGAGATCTGGTGCCAGAGAAAACTGTTGGCTTCAGCAACGTGGAAGAA 240 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 GCACTCAAAATGGCAGGCCTCTTGGACTCCCCTCCTAACAGTCCTGAGAGAAAGAACACC 300 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 ATAATTGAAGGAGGGTGCATTGTTGATACGGATTCTGAACCCAGCAAAAAATTGCAGTCA 360 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 ACTTCTGATTCAATTGTGAGGGATATATCATCGCACAAAGATGCTGATGATTCCTCCATG 420 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 CTAATTGATCTTCATGATGAAAATGGTCAAAACCTCCATACTGTAACATCATCTCAGCAA 480 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 TCAAAACATACTGGTGATGAGCATCAGAAATTGATACTCGGAGAGGAATCTACGGATGTA 540 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 ACAGCAAATAAAATTGTCTCAGTGAACTTGGATGAAGCTGGATGTAGTGCGGAACACGGA 600 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 AACTCAAATGGGTCAAATAAAGAAATTCCAGCCGACACGAATATGCCTGATGAAGGTGCT 660 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 GGGCATGTGGGGGGTGCAAAAGAGGTGAAAGTGCCAGCAAGTGATTTGTGTAACCATTCT 720 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 TGTCAGGCAAATAGCTCTCCGACAGAAGGTAAAAAGGACAGCAAGATACCGATCTTGGAC 780 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 TCCACCGAAGATAGATCCTGCAGTAACAATGCAGAGTTGAACAATAGACTTCCGAACAGA 840 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 AACAAATTGTCCACCGATCCAGCCCAAAGTGGGGATGATTCAAAGAAGTCAGCACGGGAT 900 consensus_9795#1 ------------------------------------------------------------ consensus_9795#0 CCAGATAATCACAAACCAGATTCCTCTGGTTCTATACATAAGAAGGTTGAAATGTTCGTG 960 consensus_9795#1 --------------------------------------TTTGTAAAATGTTGTCGGTGAA 22 * * * ** * * consensus_9795#0 AAAGAGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGAGCA-GTATAGGTG 1019 consensus_9795#1 AAGAGGAACATCAGACCACTTTGCAAGAGTGGTGTAATTACCGTCGANCACGTATAGGTG 82 ** ****************************************** ** ********* consensus_9795#0 GGCCGTTGCGAAAACAACAGACAAGGTCATGAAATACCA-TTCTGACGCTAAAAATGCAA 1078 consensus_9795#1 G--CCTTGCGAAGAACACAGACAAGGTCATGAAATACCACTTCTGACGCTAAAAATGCCA 140 * * ******* * *********************** ****************** * consensus_9795#0 ACTTTCTGATCAAGGAGGGCGACA-AGGTGAAAAAGCTCGCCCTGCAGTATGTTGAGGCA 1137 consensus_9795#1 ACTTTCTGATCAAGGAGGGCGACACAGGTGAAAAAGCTCGCCCGGCAGTATGTTGAGGCA 200 ************************ ****************** **************** consensus_9795#0 GCTCAGCAAAAGGTTACATGACACAGCCGAATCCGTACAAATGTAGATCGTGGTAGTTGC 1197 consensus_9795#1 GCTCAGCAAA-GGTTACATGACACAGCCGAATCCGTACCAATGTAGATCGTGGTAGTTGC 259 ********** *************************** ********************* consensus_9795#0 CAAAATGAC-AATTCAGCAATACATAAACTCTGC-AGGGGCATGGCCA-AATGTAATTCG 1254 consensus_9795#1 CCAAATGACCAATTCAGCAATACATAAACTCTGCCAGGGGCATGGCCNCAATGTAATTCG 319 * ******* ************************ ************ *********** consensus_9795#0 TCTTCCTATTTTTTTTTTACAAAAAAAAAAAAAGTCGACTGGTTGTTCGAGATTGCCA-T 1313 consensus_9795#1 TCTTCCTATTTTTTGTTT--TACAAAAAAAAAAGTCGACCGGTTGTTCGAGATTGCCACT 377 ************** *** * **************** ****************** * consensus_9795#0 TGCGACTTGCAAGCAGCGACTGCATCACGGAATCAAAGGTAAAAAAAA---AAAGATTGG 1370 consensus_9795#1 TGCGACTTGCACNCAGCGACTGCATCACGGAATCAAATGTAAAAGAAAGAAAAAGATTGG 437 *********** ************************ ****** *** ********* consensus_9795#0 AAGGGGCAAAAACCCAAAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAG 1430 consensus_9795#1 AAGGGGCAAAAACCCNGAAAAATAGTTTAGACCATATGAAATCTCAAAATTGTTAGGAAG 497 *************** ******************************************* consensus_9795#0 AATTTCGATAAATGTAGATTTACACGTGCTTCAGAGTAAATTAAGAAGTGTGCAGCTCGT 1490 consensus_9795#1 AATTTCGATAAATGTAGATTTACACGTGCTTCAGACTAAATTNNGANGTGTGCAGCTCGT 557 *********************************** ****** ** ************* consensus_9795#0 ATTTAGTT---- 1498 consensus_9795#1 ATTTAAAAAAAA 569 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||