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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9829#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1637 fasta sequence
[TCCCTCCTCCTCCTCCTCCGCCACCCTNCGCCNCCGCCCGANTNCCCTCCCACTCNCCGCCGCCGGCGACAGCAGGCAC-GG-TGCGAGCGGCCGGACGTCCTCCTCTCCTCCTCCACGCGCGTTCGCTGCCGGCGAGCAGGGGCAGACGAGCACGCGACGCGGCGCCGGCCTCCTTCCACCGCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAA-TCGAATCGAAGATGAACGGGATAAAGGAGATGATGTTGGAGGGGCTGTAGTTAAGTAGCACAAGAGAGGTGAACAGACGTCGGGAGCGTGTTCTCTCGCCATGTCTCGGTCGCCGCACCTCCCTCCCCGCTGCCCGCCGCTGGGTCCTCAGATCACAAGGAGGGACGACAGCTTGTTCACGCAGAGCTGCAGGTTTCCGTCGGAGGATCCATTCGTCGGTGAGCCGCCGTGCTGGCTCGATGATCTCCTCGCGGACTCCGGGAAGAGCCACACCCTTCCTCCTCTCAGGAGAGCCTGCAGCGATTCTGATGCTATCTTGGATGTGCTGACGTCGTTCCAGAGCCCAATCTACCCTATCGATGAAGGGGATCCGCAGCCGGTTGGCGAAGCTGGGGAGTCGTTCAATGCTGCGGCTGAAGGGGGT-GGAAGTGGTGCTGGCATCGAAGGTAGCTGTGTTTATGGACCAAATTCGCCGAGACAGAAGACTAGGCTGACCAGTTCAGAGAGTTCCATGGTTAACGCTGTCTTGGAGAATGTCCCTAGCAACCCATTGCAGTACCTGATGATTGATGCCACAAGTGGTGTGAACTGTAATGTTGGTGCAGCCAATGGAACTGGAGACACAGGTGATGCTGTATGCCACGCTGATCAAGAGAAGTCACTTAAAAGGCGCTCAGGCCAAAGATCAAGGGTCAGAAAACTTCAATACATTGCTGATCTTGAGAGAACTGTTGACTCACTTCAGAACATAGGGGCTGATTTGGCTGTGAGGGTGGCATCTCTTTTCCAGCTTCGTAATGCTCTATCAATGGAAAACAAGCAACTGAGGAGGCAGATCACTAGTCTTCAGCAGGCAAAACTAATTAAGGATGGCCAAACGCAGATGCTGAAGAAGGAAACCGAGAGGCTGAAGCAGCTCTCAGTGCGCCACCGCAGGAGCAGGAGCGTCACCTCTTGCTTTGAGGCCAACTCATTTGGAGGAGGAGACCCATCTGCGATCAACTGGCAGATGCTCGACATGTCAAAGCTCAGCTTGAACGGCGGCGCTGTTGTTCCTCCTAGAGGCGGCTACGGCATGTGAAAATTTGACAG---CAACAACCAACATTGCCTGCACTGATCTTCACCTGTGACAGAATTGCTTGCAATATCATTAGTTTGTGGTTAACAGTTCACTAACCTGACCAACCATAGGTTTATTATTATGGGTCCATCTTTTAGGAGAGGGAGATTAAGAGAGGGAGAGAGTTGAGAGAACATCAGTCGTTATCGCGGAAGATTTGCTGAGGTTATCATGCAAGTTTTATCTTTTTTGTAGAATTCTGCAATGACTTCCATCGAACACATATGAGATGAAGCAATCTTTGCATTGCTTAAATTGCTGTGTTTAGCGTCAGAGTTTGCAGCTTGTGCTTTG]
[+] EMBL C27128 [TCCCTCCTCCTCCTCCTCCGCCACCCTNCGCCNCCGCCCGANTNCCCTCCCACTCNCCGCCGCCG NNNAGCAGG ACNGGTTGCGAGCGGCCGGACGTCCTCCTCTCCTCCTCCACNCGCGTTCGCTGCCGGC AGCAGGGGCAGACGAGCACNCGA CGGCGCCGGCCTCCTTCCACCGTCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCAAATTCGAATCGAAGATGAACGGGATAAAGGAGATGATGTTGGAGGGGCTGTAGTTAAGTAGCACAAGAGAGGTGAACAGACGTCGGGAGCGTGTTCTCTC ]
[+] EMBL AK063644 [ CTCCTCCTCCTCCTCCGCCACCCTGCGCCGCCGCCCGAATCCCCTCCCACTCGCCGCCGCCGGCGACAGCAGGCAC GG TGCGAGCGGCCGGACGTCCTCCTCTCCTCCTCCACGCGCGTTCGCTGCCGGCGAGCAGGGGCAGACGAGCACGCGACGCGGCGCCGGCCTCCTTCCACCGCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAA TCGAATCGAAGATGAACGGGATAAAGGAGATGATGTTGGAGGGGCTGTAGTTAAGTAGCACAAGAGAGGTGAACAGACGTCGGGAGCGTGTTCTCTCGCCATGTCTCGGTCGCCGCACCTCCCTCCCCGCTGCCCGCCGCTGGGTCCTCAGATCACAAGGAGGGACGACAGCTTGTTCACGCAGAGCTGCAGGTTTCCGTCGGAGGATCCATTCGTCGGTGAGCCGCCGTGCTGGCTCGATGATCTCCTCGCGGACTCCGGGAAGAGCCACACCCTTCCTCCTCTCAGGAGAGCCTGCAGCGATTCTGATGCTATCTTGGATGTGCTGACGTCGTTCCAGAGCCCAATCTACCCTATCGATGAAGGGGATCCGCAGCCGGTTGGCGAAGCTGGGGAGTCGTTCAATGCTGCGGCTGAAGGGGGT GGAAGTGGTGCTGGCATCGAAGGTAGCTGTGTTTATGGACCAAATTCGCCGAGACAGAAGACTAGGCTGACCAGTTCAGAGAGTTCCATGGTTAACGCTGTCTTGGAGAATGTCCCTAGCAACCCATTGCAGTACCTGATGATTGATGCCACAAGTGGTGTGAACTGTAATGTTGGTGCAGCCAATGGAACTGGAGACACAGGTGATGCTGTATGCCACGCTGATCAAGAGAAGTCACTTAAAAGGCGCTCAGGCCAAAGATCAAGGGTCAGAAAACTTCAATACATTGCTGATCTTGAGAGAACTGTTGACTCACTTCAGAACATAGGGGCTGATTTGGCTGTGAGGGTGGCATCTCTTTTCCAGCTTCGTAATGCTCTATCAATGGAAAACAAGCAACTGAGGAGGCAGATCACTAGTCTTCAGCAGGCAAAACTAATTAAGGATGGCCAAACGCAGATGCTGAAGAAGGAAACCGAGAGGCTGAAGCAGCTCTCAGTGCGCCACCGCAGGAGCAGGAGCGTCACCTCTTGCTTTGAGGCCAACTCATTTGGAGGAGGAGACCCATCTGCGATCAACTGGCAGATGCTCGACATGTCAAAGCTCAGCTTGAACGGCGGCGCTGTTGTTCCTCCTAGAGGCGGCTACGGCATGTGAAAATTTGACAG CAACAACCAACATTGCCTGCACTGATCTTCACCTGTGACAGAATTGCTTGCAATATCATTAGTTTGTGGTTAACAGTTCACTAACCTGACCAACCATAGGTTTATTATTATGGGTCCATCTTTTAGGAGAGGGAGATTAAGAGAGGGAGAGAGTTGAGAGAACATCAGTCGTTATCGCGGAAGATTTGCTGAGGTTATCATGCAAGTTTTATCTTTTTTGTAGAATTCTGCAATGACTTCCATCGAACACATATGAGATGAAGCAATCTTTGCAT ]
[+] EMBL CA756663 [ GCCGGAGACAGTAGGCAC GG TGCGGCCGGCCGGCCGGACGTC CTCCTCCTCCACGCGCGTTCGCTGCCGGCGAGCAGGGGCAAACGAGCACGCGACGCGGCGCCGACCTCCTTCCACCGCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAA TCGAATCGAAGATGAACGGGATAAAGGAGATGATGTTGGAGGGGCTGTAGTTAAGTAGCACAAGAGAGGTGAACAGACGTC GGAGCGTGTTCTCTCGCCATGTCCCGGTCGCCGCACCTCCCTCCCCGCTGCCCGCCGCTGGGTCCTCAGATCACAAGGAGGGACGACAGCTTGTTCACGCAGAGCTGCAGGTTTCCGTCAGAGGATCCGTTTGTCGGTGAGCCGCCGTGCTGGCTCGATGATCTCCTCGCGGACTCCGGGAAGAGCCACACCCTTCCTCCTCTCAGGAGAGCCTGCAGCGATTCTGATGCTATCTTGGATGTGCTGACGACGTTCCAGAGCCCAATTTACCCTATCGATGAAGGGGATCCGCAGCCGGTTGGCGAAGCTGGGGAGTCATTCAATGCTGCGGCGGAAGGGGNTGGGAAGTGGTGCTGGCATCGAAGGTAGCTGTGTTTATGGGCCAAATTCGCCGAGACAG ]
[+] EMBL CF306275 [ TTAAGTAGCACAAGAGAGGTGAACAGACGTCGGGAGCGTGTTCTCTCGCCATGTCTCGGTCGCCGCACCTCCCTCCCCGCTGCCCGCCGCTGGGTCCTCAGATCACAAGGAGGGACGACAGCTTGTTCACGCAGAGCTGCAGGTTTCCGTCGGAGGATCCATTCGTCGGTGAGCCGCCGTGCTGGCTCGATGATCTCCTCGCGGACTCCGGGAAGAGCCACACCCTTCCTCCTCTCAGGAGAGCCTGCAGCGATTCTGATGCTATCTTGGATGTGCTGACGTCGTTCCAGAGCCCAATCTACCCTATCGATGAAGGGGATCCGCAGCCGGTTGGCGAAGCTGGGGAGTCGTTCAATGCTGCGGCTGAAGGGGGT GGAAGTGGTGCTGGCATCGAAGGTAGCTGTGTTTATGGACCAAATTCGCCGAGACAGAAGACTAGGCTGACCAGTTCAGAGAGTTCCATGGTTAACGCTGTCTTGGAGAATGTCCCTAGCAACCCATTGCAGTACCTGATGATTGATGCCACAAGTGGTGTGAACTGTAATGTTGGTGCAGCCAATGGAACTGGAGACACAGGTGATGCTGTATGCCACGCTGATCAAGAGAAGTCACTTAAAAGGCGCTCAGGCCAAAGATCAAGGGTCAGAAAACTTCAATACATTGCTGATCTTGAGAGAACTGTTG ]
[+] EMBL CA765050 [ ACTAATTAAGGATGGCCAAACGCAGATGCTGAAGAAGGAAACCGAGAGGCTGAAGCAGCTCTCAGTGCGCCACCGCAGGAGCAGGAGCGTCACCTCTTGCTTTGAGGCCAACTCATTTGGAGGAGGAGACCCATCTGCGATCAACTGGCAGATGCTCGACATGTCAAAGCTCAGCTTGAACGGCGGCGCTGTTGTTCCTCCTAGAGGCGGCTACGGCATGTGAAAATTTGACAGCAACAACAACCAACATTGCCTGCACTGATCTTCACCTGTGACAGAATTGCTTGCAATATCATTAGTTTGTGGTTAACAGTTCACTAACCTGACCAACCATAGGTTTATTATTATGGGTCCATCTTTTAGGAGAGGGAGATTAAGAGAGGGAGAGAGTTGAGAGAACATCAGTCGTTATCGCGGAAGATTTGCTGAGGTTATCATGCAAGTTTTATCTTTTTTGTAGAATTCTGCAATGACTTCCATCGAACACATATGAGATGAAGCAATCTTTGCATTGCTTAAATTGCTGTGTTTAGCGTCAGAGTTTGCAGCTTGTGCTTTG]
consensusID : consensus_9829#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[GACGGAGACAGGATGCACGGTGCGGACGGCCGGCCGGACCTGCTGCTCCTCCACGCGCGTGCGCTGGCGGCGAGCAGGGGCGAACGAGCACGCCACGCGGCGCCGACCTGCTTCCACCGCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAGTCGAATCAAAGATGAACGGGATAAAGGAGATGACGTTGGAGGGGCTGCTGCTCACTCCCCCATGATAGGTGAACA]
[+] EMBL CA758062 [GACGGAGACAGGATGCACGGTGCGGACGGCCGGCCGGACCTGCTGCTCCTCCACGCGCGTGCGCTGGCGGCGAGCAGGGGCGAACGAGCACGCCACGCGGCGCCGACCTGCTTCCACCGCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAGTCGAATCAAAGATGAACGGGATAAAGGAGATGACGTTGGAGGGGCTGCTGCTCACTCCCCCATGATAGGTGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9829#0 TCCCTCCTCCTCCTCCTCCGCCACCCTNCGCCNCCGCCCGANTNCCCTCCCACTCNCCGC 60
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CGCCGGCGACAGCAGGCACGGTGCGAGCGGCCGGACGTCCTCCTCTCCTCCTCCACGCGC 120
consensus_9829#1 -GACGGAGACAGGATGCACGGTGCGGACGGCCGGCCGGAC-CTGCTGCTCCTCCACGCGC 58
* *** ***** * ********** ******* ** * * ** *************
consensus_9829#0 GTTCGCTGCCGGCGAGCAGGGGCAGACGAGCACGCGACGCGGCGCCGGCCTCCTTCCACC 180
consensus_9829#1 GTGCGCTGGCGGCGAGCAGGGGCGAACGAGCACGCCACGCGGCGCCGACCTGCTTCCACC 118
** ***** ************** ********** *********** *** ********
consensus_9829#0 GCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAATCGAATCGAAGATGAAC 240
consensus_9829#1 GCCACCTACCTGACGCCGCCGCCTCGGTTCGAACCGAACCGAGTCGAATCAAAGATGAAC 178
****************************************** ******* *********
consensus_9829#0 GGGATAAAGGAGATGATGTTGGAGGGGCTGTAGTTAAGTAGCACAAGAGAGGTGAACAGA 300
consensus_9829#1 GGGATAAAGGAGATGACGTTGGAGGGGCTGCTGCTCACTCCCCCATGATAGGTGAACA-- 236
**************** ************* * * * * * ** ** *********
consensus_9829#0 CGTCGGGAGCGTGTTCTCTCGCCATGTCTCGGTCGCCGCACCTCCCTCCCCGCTGCCCGC 360
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CGCTGGGTCCTCAGATCACAAGGAGGGACGACAGCTTGTTCACGCAGAGCTGCAGGTTTC 420
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CGTCGGAGGATCCATTCGTCGGTGAGCCGCCGTGCTGGCTCGATGATCTCCTCGCGGACT 480
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CCGGGAAGAGCCACACCCTTCCTCCTCTCAGGAGAGCCTGCAGCGATTCTGATGCTATCT 540
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 TGGATGTGCTGACGTCGTTCCAGAGCCCAATCTACCCTATCGATGAAGGGGATCCGCAGC 600
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CGGTTGGCGAAGCTGGGGAGTCGTTCAATGCTGCGGCTGAAGGGGGTGGAAGTGGTGCTG 660
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GCATCGAAGGTAGCTGTGTTTATGGACCAAATTCGCCGAGACAGAAGACTAGGCTGACCA 720
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GTTCAGAGAGTTCCATGGTTAACGCTGTCTTGGAGAATGTCCCTAGCAACCCATTGCAGT 780
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 ACCTGATGATTGATGCCACAAGTGGTGTGAACTGTAATGTTGGTGCAGCCAATGGAACTG 840
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GAGACACAGGTGATGCTGTATGCCACGCTGATCAAGAGAAGTCACTTAAAAGGCGCTCAG 900
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GCCAAAGATCAAGGGTCAGAAAACTTCAATACATTGCTGATCTTGAGAGAACTGTTGACT 960
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 CACTTCAGAACATAGGGGCTGATTTGGCTGTGAGGGTGGCATCTCTTTTCCAGCTTCGTA 1020
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 ATGCTCTATCAATGGAAAACAAGCAACTGAGGAGGCAGATCACTAGTCTTCAGCAGGCAA 1080
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 AACTAATTAAGGATGGCCAAACGCAGATGCTGAAGAAGGAAACCGAGAGGCTGAAGCAGC 1140
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 TCTCAGTGCGCCACCGCAGGAGCAGGAGCGTCACCTCTTGCTTTGAGGCCAACTCATTTG 1200
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GAGGAGGAGACCCATCTGCGATCAACTGGCAGATGCTCGACATGTCAAAGCTCAGCTTGA 1260
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 ACGGCGGCGCTGTTGTTCCTCCTAGAGGCGGCTACGGCATGTGAAAATTTGACAGCAACA 1320
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 ACCAACATTGCCTGCACTGATCTTCACCTGTGACAGAATTGCTTGCAATATCATTAGTTT 1380
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GTGGTTAACAGTTCACTAACCTGACCAACCATAGGTTTATTATTATGGGTCCATCTTTTA 1440
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 GGAGAGGGAGATTAAGAGAGGGAGAGAGTTGAGAGAACATCAGTCGTTATCGCGGAAGAT 1500
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 TTGCTGAGGTTATCATGCAAGTTTTATCTTTTTTGTAGAATTCTGCAATGACTTCCATCG 1560
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 AACACATATGAGATGAAGCAATCTTTGCATTGCTTAAATTGCTGTGTTTAGCGTCAGAGT 1620
consensus_9829#1 ------------------------------------------------------------
consensus_9829#0 TTGCAGCTTGTGCTTTG 1637
consensus_9829#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||