|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1581 fasta sequence
[TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT-GGCGCGGGTGGAGCTCGGAAGCAG-GCGCAGCCTCCACGGGCGCAG-GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC-GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA-GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA-ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAATCCTTGCTCCTCAAAAAGGAA]
[+] EMBL CB665399 [TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT GGCGCGGGTGGAGCTCGGAAGCAG GCGCAGCCTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCCATT ]
[+] EMBL AK108028 [ GCCGCCGGAGAGCAGCCAGCAGCGGGGTGCGGGCGGGCGCGGGCGCGACGCGCGT GGCGCGGGTGGAGCTCGGAAGCAG GCGCAGCCTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGCCGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAATCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTTTGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCGTCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGTCAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGA ]
[+] EMBL OSC107051 [ GCGGGCGCGACG G GTNGGCG GGATGGAGCTCGGAAGCAG GCGCA CTCCACGGGCGCAG GCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTTGTTCCGGGCGAA NTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATC GACCCCTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCA GAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGC ]
[-] EMBL BI809359 [ CGCGACGCGCGT TGCGCGGGTGGAGCTCGGAAGCAGTGCGCAGCCTCCACGGGCGCAGTGCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAGGTTGTGGTGGGGCGTGTGG GGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGGTTTGTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATCTGAACCCTCCCTCGTCAGGTACAATGAATTTGATCAG CCATCTGCAGGAATCTGCAATGTTACTCTGAAATCTGAAGCACTTTGG CTGCACATC ]
[-] EMBL CB665400 [ AAGTCAAGCCAATACCAATGTCAAAGGTGTTCTTCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAATAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCA ACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCGCCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTTAGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAA ]
[-] EMBL CB665035 [ CGCATGCAGGTGAAAGGTGTTCGTCATGGCTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTCTAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTTTGATATCAAAGATGCAGATCTCCGTGCTCGTGGTATCCACACCTCCGAAAATCGATATCAATGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGTCTTGCAGGAAGTTGATGATCCCCTTGAAGAAGAGGAGATTGATGCTGCTCCTGAGAGAGAAGAGTACTTGTCATTAGAGCAAGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGCCCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTCATCTAGTGTCGACGAAGATGACACCACGGATTTTGCTGTTGATTGGAGAGCACAACATTTGAAACGATGTGGAGATTTTTGTGATTGGTTACCCTCCGACGATGACAACATAGATCTGTTAGCATCCCCCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGAGGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTCTATCGGAAAAATGTTCGAGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAATCCTTGCTCCTCAAAAAGGAA]
consensusID : consensus_9868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[TNTGTTAGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNAGGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAACTGGTGAATGNGTATAATCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU181206 [TNTGTTAGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNAGGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCGAGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAACTGGTGAATGNGTATAATCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9868#0 TAGACGAGGAGGAGAAGACGCCGCCGCCATCTTCGCGGCCGCCGGAGAGCAGCCAGCAGC 60
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 GGGGTGCGGGCGGGCGCGGGCGCGACGCGCGTGGCGCGGGTGGAGCTCGGAAGCAGGCGC 120
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 AGCCTCCACGGGCGCAGGCGGGGTTGCCGGGACGCGCCTGGGCGGGCGGGCGGGCTCGAG 180
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 GTTGTGGTGGGGCGTGTGGCAGGATCCTCCTCGCGCCGCCATGGATCAGAGGAAGGCGTT 240
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 GTTCCGGGCGAAGCTCCGGGAGCGCGAGGCCAAGGAGAAGCAGGAGAGGCGCATCGACCC 300
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CTCCCTCGTCAGGTACAATGAATTTGATCAGCCCATCTGCAGAATCTGCAATGTTACTCT 360
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 GAAATCTGAAGCACTTTGGCCTGCACATCAAGTTTCACGAAAACATCATGAGGCAAAAGC 420
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CGCTGCAGCTGCATCTGCTAAAGCTCCATCAGGTGCAGGGTCTCGTGGCAATAAGGCCAA 480
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TCATGAACAACCTGCAGAGTCTCAGAAACCAAAATCTTCCACATTGCCTGCCAACTTTTT 540
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TGAAAACCAGGGAATGAAGAGGCATAGTGATGGCGCTGGTTCTGAAGGAAGGTCTGTGCG 600
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TCGGGAGGTAGCTGATGTTCAGCAAAAAACCAAAGAAGCAAGCAAAACTAAGCCATCTGT 660
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CAATTTTGAGAAAATACCAAAGAAAGAAAGTCAAGCCAATACCAATGTCAAAGGTGTTCT 720
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TCCAGGGAACTTTTTTGACTATAATGATGAAGATGAAGATCCAGCTCCTACTGAGGCGAA 780
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TAGTGCACCTGGAAATCCTCCAATTTCAAATCGCATGCAGGTGAAAGGTGTACCTGATGG 840
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CTTCTTTGATGGCAACAAAAACAGCAATGGCATGCAACCCAGTGAACCAAGTCAATCGTC 900
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TAAAGCCGTAAAGAGTTCAGAAACTTCTGAAGTAAAAGGATCGCTACCAGAAGGTTTCTT 960
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TGATAACAAAGATGCAGATCTCCGTGCTCGTGGTATCCAACCTCCGAAAATCGATATCAA 1020
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 TGATGCTTACAAAGAATTTGAGAAGGAAATTCAGGAGGACTTGCAGGAAGTTGATGATCG 1080
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CCTTGAAGAAGAGGAGATTGATGCTGCTGCTGAGAGAGAAGAGTACTTGACATTAGAGCA 1140
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 AGAGGAGTATAGGCAGCGGGTGGATATGCTGAAGAAACAGCTTACCGAGTCAAAAGCCGC 1200
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 CCGTACCACTAAAGCAAACAGCAAACCTGTTGGTATGGACATGTTGTCAAGCAGCGACTC 1260
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 ATCTAGTGACGAGGAAGATGACAGCACGGATTTTGCTGTTGATTGGAGAGCACAACATTT 1320
consensus_9868#1 ------------------------------------------------------------
consensus_9868#0 GAAATGATGTGGAGATTTTTGTGATTGGCTACCCACCGACGATGACAACATAGATCTGTT 1380
consensus_9868#1 ------------------------------------------------------TNTGTT 6
* ****
consensus_9868#0 AGCATCCACCATTGTGCATCCGTGACAATCAGATCCCAGCACCTCTAGGTTTCTGCTTGA 1440
consensus_9868#1 AGCATCCCCCATTGNGCATCCGTGACAATCAGATCCCAGCCCCTTTAGGTTTNTGCTTNA 66
******* ****** ************************* *** ******* ***** *
consensus_9868#0 GGAGAAGATGATCTCTTTTTTTTTTCTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCG 1500
consensus_9868#1 GGANAANATGATCTCTTTTTTTTTTNTGTTGCATCTTGTCTTTTATCGGAAAAATGTTCG 126
*** ** ****************** **********************************
consensus_9868#0 AGCTAATCATGAATTAACACGATGAGAATAGTTTTGGAGAATCTGGTGAATGCTGTATAA 1560
consensus_9868#1 AGCTAATCATGAATTAACCCGATGAGAATAGTTTTGGAGAA-CTGGTGAATGN-GTATAA 184
****************** ********************** ********** ******
consensus_9868#0 TCCTTGCTCCTCAAAAAGGAA------------------------------------- 1581
consensus_9868#1 TCCTTGCNCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
******* *** ***** **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||