These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2609 fasta sequence [GTCTGAAGGCTAACCTGTAGACTTGTACAGTACCTCAGTTACCCGGGCCCCCGAACCCCCAAACCCCCGCCGTCTCCCGCTTCCAAAACCCTAGCTCATCGTCGTCCGGCGGCGGGGATGCCAGGGATGCTGATGGACGGCGGCGGCGCCATCGTGCCGTTCTCGGGAGAACCAGGCCACGCGGTGGCGGCGGNCCCGNCCGNGCGGAACATCCGCCACGGCGTGGCCCCGCCCATCTGCCGCGTCTACGTTTCCTTTTCTAGCGGCAACCTCCTGCAGGTCGCCTGCCTCCGCCCACCGAATCCGGAGGGTGGCGGAGACCGTGGGGCGGAGGAGGTCTCCGGGGGGAGAGTGGTGGAGGTAAACCTCGGAGGTGGCGGTAGCGGGCCTGGCGGCGCGGATGCGGAGGAGATCGATGAGGCGGAAATGCGGAGGATCGAGTACGGGTCG-GTACCGGCGTTTGCGCTGCTTCAGAGCAGGAAGAACGCGCTCGTAGATGGCTCCGGTATGTCGCGCTTGCCCTCAGTCTCGGAGCACGCAGAATGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAACCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGAGAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACAGTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTTGACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAACCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGTTGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCAGATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAACAATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAGACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCGAGTAAGTAAACTGGAGTGCAGTGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCATATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTTTGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTTAGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCTTACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATATGATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGGAGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTACCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAGGTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACATTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAAATGTATTTTAGAATGGGCACAATATTGTATTCCT] [+] EMBL AK072636 [GTCTGAAGGCTAACCTGTAGACTTGTACAGTACCTCAGTTACCCGGGCCCCCGAACCCCCAAACCCCCGCCGTCTCCCGCTTCCAAAACCCTAGCTCATCGTCGTCCGGCGGCGGGGATGCCAGGGATGCTGATGGACGGCGGCGGCGCCATCGTGCCGTTCTCGGGAGAACCAGGCCACGCGGTGGCGGCGGNCCCGNCCGNGCGGAACATCCGCCACGGCGTGGCCCCGCCCATCTGCCGCGTCTACGTTTCCTTTTCTAGCGGCAACCTCCTGCAGGTCGCCTGCCTCCGCCCACCGAATCCGGAGGGTGGCGGAGACCGTGGGGCGGAGGAGGTCTCCGGGGGGAGAGTGGTGGAGGTAAACCTCGGAGGTGGCGGTAGCGGGCCTGGCGGCGCGGATGCGGAGGAGATCGATGAGGCGGAAATGCGGAGGATCGAGTACGGGTCG GTACCGGCGTTTGCGCTGCTTCAGAGCAGGAAGAACGCGCTCGTAGATGGCTCCGGTATGTCGCGCTTGCCCTCAGTCTCGGAGCACGCAGAATGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAACCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGAGAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACAGTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTTGACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAACCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGTTGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCAGATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAACAATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAGACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCGAGTAAGTAAACTGGAGTGCAGTGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCATATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTTTGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTTAGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCTTACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATATGATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGGAGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTACCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAGGTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACATTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAAATGTATTTTAGAATGGGCACAATATTGTATTCCT] [+] EMBL CB678102 [ GTCGCGT CCGGCGTTTGCGCTGCTTCAGAGCAGGAAGAACGCGCTCGTAGATGGCTCCGGTATGTCGCGCTTGCCCTCAGTCTCGGAGCACGCATAATGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAACCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGAGAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACAGTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTTGACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAACCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAACTCTATCGGTTGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCAGATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAACGATGCCACGCATGCTACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAGACCACATTTTATAAAGGCATTGGAAAAATGGCGAGGTCAAGTAAGTAAACTGGAGTGCAGTGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCATA ] [+] EMBL CA764113 [ GCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGGAGTTTACTGGTTCCAGCAAGCTAATGA AAAGTTCGTCTTGACAGAATTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGNTNATCGTCAGTTGATTACCAGTAACTGTATGNTNCTTGGGAAGAGGNTGAACCTGNGNTCACTCTGAATGAGCNAAGGGTGAACTTGGGNTCCTTCATGAATGAGCAATTGNGTCATGCATGTATATGTACCGGACA TGGATTTTTAGCTTTAGGGATACCCTAAATGGTACTTANTTACAAA NAATGCTAGTAAATGGNTTTTANAATGG ] [-] EMBL CB678103 [ tnTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTGTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTATAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTACCAGTAACTGTATGTTCTTTGGGAAGAGGTTGAACTTGTGTTCACTTTGAATGAGCAAAGGTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACATTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAGGAAATGCTAGTAAATGTATTTTAGAATGGGCA ] consensusID : consensus_9874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2463 fasta sequence [CCAACTATATAGAAAGAAAGGATTACTGCCCAAGCTATGCTTGTACTGGGATAGGCATGTCACATATCGCTCAGAATTTTAAGTTTTAGCAATGCTTTGTTATATTGTTTGTGTTCGATAGCTATCCAACTATTCAGATACCCTTTTTCATATTGTAGAAGCTGAATTTGTAGCTCTTAGGCTTCCGCCTAAATGGATAAATCGACATATCTGAAGTACACATATGGTTAAATTTTAAACATCTGTGCCAAAGTGGTATTATAATCACTGTTTATACAGTTAATCTAGATCAAACCTCTGCCTAGTATAAGCTATCCATTTTTTCCATGTGCTTGCTTCTGATTCTACTATGTTTTGTCAGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAACCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGAGAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACAGTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTTGACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAACCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGTTGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCAGATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAACAATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAGACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCAAGTAAGTAAACTGGAGTGCAGTGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCATATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTTTGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTTAGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCTTACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATATGATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGG-AGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACCTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTACCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAGGTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACATTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAAATGTATTTTAGAATGGGCACAATATTGTATTCCTTGTTTCTTCCTCTATTTCTTTTGGGGTGAATAACTCTT] [+] EMBL AK066787 [CCAACTATATAGAAAGAAAGGATTACTGCCCAAGCTATGCTTGTACTGGGATAGGCATGTCACATATCGCTCAGAATTTTAAGTTTTAGCAATGCTTTGTTATATTGTTTGTGTTCGATAGCTATCCAACTATTCAGATACCCTTTTTCATATTGTAGAAGCTGAATTTGTAGCTCTTAGGCTTCCGCCTAAATGGATAAATCGACATATCTGAAGTACACATATGGTTAAATTTTAAACATCTGTGCCAAAGTGGTATTATAATCACTGTTTATACAGTTAATCTAGATCAAACCTCTGCCTAGTATAAGCTATCCATTTTTTCCATGTGCTTGCTTCTGATTCTACTATGTTTTGTCAGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAACCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGAGAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACAGTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTTGACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAACCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGTTGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCAGATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAACAATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAGACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCAAGTAAGTAAACTGGAGTGCAGTGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCATATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTTTGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTTAGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCTTACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATATGATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCTGTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGG AGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGTTCGGCAAACCGTGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTTTCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGTTAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAACTTCGGCCTGACCTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAGCTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTGGGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTACCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAGGTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACATTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAAATGTATTTTAGAATGGGCACAATATTGTATTCCTTGTTTCTTCCTCTATTTCTTTTGGGGTGAATAACTCTT] [+] EMBL OSC19771 [ AAATTTGCCGNTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGGAACTGGTAGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAANTGCTCAACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGGGCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAGGTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGNAG ] consensusID : consensus_9874#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TTTTTTTTTTTTTTCTAACATTAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATCCGGATATAATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGGGCTCTCATGCTTTAACATGGCAAATTGCACCAACTTATCTGTCCTCATGTCTAAACCGAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGGTACTTTGTATTGATATGCCCTTGAATTTTTTCTGCACCTTTGCTTTTTGTTACCTAATATTGTTGTTGGGAGCAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGGTAAGATGTTCTTTCCAATGCATGTACACCTGTACTTTTCCAAGATTTCAAAACGAAAATTTCTTGGAGTTTTAACCTGGCTTAGTTATTATCTATATATTCAAACTTACCAGCATGCATATTTTATTGTACCCACCTGTCGTTTTGACTCACGAGTCCTATCTATTTTTTCTTCTAGATTGCTGGCATTTATCATTGGAAACA] [+] EMBL CA759769 [TTTTTTTTTTTTTTCTAACATTAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGGTCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATCCGGATATAATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCTTGTTTATGCTCAAGTTTTGGGCTCTCATGCTTTAACATGGCAAATTGCACCAACTTATCTGTCCTCATGTCTAAACCGAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCATACAAGATAATCGTGTTGTATTGAAGGTACTTTGTATTGATATGCCCTTGAATTTTTTCTGCACCTTTGCTTTTTGTTACCTAATATTGTTGTTGGGAGCAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAATGTTAGTACAAATATCATGAAGGTAAGATGTTCTTTCCAATGCATGTACACCTGTACTTTTCCAAGATTTCAAAACGAAAATTTCTTGGAGTTTTAACCTGGCTTAGTTATTATCTATATATTCAAACTTACCAGCATGCATATTTTATTGTACCCACCTGTCGTTTTGACTCACGAGTCCTATCTATTTTTTCTTCTAGATTGCTGGCATTTATCATTGGAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9874#0 GTCTGAAGGCTAACCTGTAGACTTGTACAGTACCTCAGTTACCCGGGCCCCCGAACCCCC 60 consensus_9874#1 ------------------------------------------------------------ consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 AAACCCCCGCCGTCTCCCGCTTCCAAAACCCTAGCTCATCGTCGTCCGGCGGCGGGGATG 120 consensus_9874#1 ------------------------------------------------------------ consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CCAGGGATGCTGATGGACGGCGGCGGCGCCATCGTGCCGTTCTCGGGAGAACCAGGCCAC 180 consensus_9874#1 ----------------------------------------------------CCAACTAT 8 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GCGGTGGCGGCGGNCCCGNCCGNGCGGAACATCCGCCACGGCGTGGCCCCGCCCATCTGC 240 consensus_9874#1 ATAGAAAGAAAGGATTACTGCCCAAGCTATGCTTGTACTGGGATAGGCATGTC-ACATAT 67 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CGCGTCTACGTTTCCTTTTCTAGCGGCAACCTCCTGCAGGTCGCCTGCCTCCGCCCACCG 300 consensus_9874#1 CGC-TCAGAATTTTAAGTTTTAGCAATGCTTTGTTATA--TTGTTTGTGTTCGATAGCT- 123 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 AATCCGGAGGGTGGCGGAGACCGTGGGGCGGAGGAGGTCTCCGGGGGGAGAGTGGTGGAG 360 consensus_9874#1 -ATCCAACTATTCAGATACCCTTTTTCATATTGTAGAAGCTGAATTTGTAGCTCTTAGGC 182 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GTAAACCTCGGAGGTGGCGGTAGCGGGCCTGGCGGCGCGGATGCGGAGGAGATCGATGAG 420 consensus_9874#1 TTCCGCCTAAATGGATAAATCGACATATCTGA-AGTACACATATGGTTAAATT---TTAA 238 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GCGGAAATGCGGAGGATCGAGTACGGGTCGGTACCGGCGTTTGCGCTGCTTCAGAGCAGG 480 consensus_9874#1 ACATCTGTGCCAAAGTGGTATTATAATC----ACTGTTTATACAGTTAATCTAGATCA-- 292 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 AAGAACGCGCTCGTAGATGGC-TCCGGTATGTC---GCGCTTGCCCTCAGTCTCGGAGCA 536 consensus_9874#1 AACCTCTGCCTAGTATAAGCTATCCATTTTTTCCATGTGCTTGCTTCTGATTCTACTATG 352 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CGCAGAATGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAA 596 consensus_9874#1 TTTTGTCAGGTGGCAATATGTGCTTGAATACAGTAAAACCATCGGTAGTCTCCTTGGGAA 412 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGA 656 consensus_9874#1 CCCAGATTCTCTTTCTGCTTACATGATTGATGACCCAAAGATGATCCTTAAGGTCAAGGA 472 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACA 716 consensus_9874#1 GAAGCCTACTAGTTTAAAGGCTGCGTGGGAGTTGCTAGAGATATTCTTTGTTGATAAACA 532 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTT 776 consensus_9874#1 GTTGCAAACTTGGCTTCCAGAGCGTCTTGTTGATTGGTTAGCCGACTATGACAGCCTCTT 592 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAA 836 consensus_9874#1 GACCAAGACAGAGAACACGATATATCGCACGCTGATCAATTTCCAGAAAAAGCTCATCAA 652 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGT 896 consensus_9874#1 CCTGCAGGTTGTTGAAGATGATCCTGATTATTGGAGTGGATTATCAGCAGCTCTATCGGT 712 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCA 956 consensus_9874#1 TGGATGGCTTGATATTGTGGTGAATATGCTACGTTTTCATGGATCATACCAATTGGATCA 772 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAAC 1016 consensus_9874#1 GATGGACAGCCGTGAGACAGAAAATGGGTTGGTTGAAGCTGTTGCTGTTCTTGTGTCAAC 832 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 AATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAG 1076 consensus_9874#1 AATGCCACGCATGCGACCAGATTTGCCATCGGGTAAATTAGGCCAGTGTTGTAAAACAAG 892 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 ACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCGAGTAAGTAAACTGGAGTGCAG 1136 consensus_9874#1 ACCAGATTTTATAAAGGCATTGGAAAAATGGCGAGGTCAAGTAAGTAAACTGGAGTGCAG 952 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCA 1196 consensus_9874#1 TGCATTCTGGATTCAGTGCGGTCACCAAAAAACTCGTGATGGTCTGAAGAGTTTGCTTCA 1012 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTT 1256 consensus_9874#1 TATTATGTTGGGGAACATAAAGAACCTCACTGCTTCTACTTCACATTGGCTGGAGCTCTT 1072 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTT 1316 consensus_9874#1 TGCTTCTCATTTACTTTATATAAGGCCATTCACAGTGGGTTTTGAAGGGATGCATCAGTT 1132 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 AGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCT 1376 consensus_9874#1 AGCACAAAAGTGCATACAGCTTAAACCGTCTGCTGACAATAGCGGATTGACAGGCCTCCT 1192 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGG 1436 consensus_9874#1 TACTGGTATCCTTTCAGAAAATAGAGAGGTTGTCTTGGCTGAATGCACAAAAAATTTTGG 1252 consensus_9874#2 TTTTTTTTTTTTTTCTAACATTA----GGTTGTCTTGGCTGAATGCACAAAAAATTTTGG 56 * * * * **** * * ** ********************************* consensus_9874#0 TCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATAT 1496 consensus_9874#1 TCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATGCGGATAT 1312 consensus_9874#2 TCCTTGGATGGTCACACATGCTATGGAGCTGCTGACTGCTGACAATGACTATCCGGATAT 116 **************************************************** ******* consensus_9874#0 GATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCT 1556 consensus_9874#1 GATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCT 1372 consensus_9874#2 AATGTTGCATGAAGAGAGGCCTAACTTCGGTGGTATAAGCATAGAGGAGCTGCACAGGCT 176 *********************************************************** consensus_9874#0 TGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCT 1616 consensus_9874#1 TGTTTATGCTCAAGTTTTGTGCTCTCATGCTTTAACATGGCAGATTGCACCAACTTATCT 1432 consensus_9874#2 TGTTTATGCTCAAGTTTTGGGCTCTCATGCTTTAACATGGCAAATTGCACCAACTTATCT 236 ******************* ********************** ***************** consensus_9874#0 GTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCAT 1676 consensus_9874#1 GTCCTCATGTCTAAACCAAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCAT 1492 consensus_9874#2 GTCCTCATGTCTAAACCGAGGCCTAGGGCTGTTGGAGATTCTGCTTCTGAAGCAACCCAT 296 ***************** ****************************************** consensus_9874#0 ACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAA 1736 consensus_9874#1 ACAAGATAATCGTGTTGTATTGAAGACTTTGGAAATTTGCCGCTTGTATGAGCTGGAGAA 1552 consensus_9874#2 ACAAGATAATCGTGTTGTATTGAAGGT-------ACTTTGTATTGATATGCCCTTGA-AT 348 ************************* * ** * **** ** ** * consensus_9874#0 TGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGG 1796 consensus_9874#1 TGTTAGTACAAATATCATGAAGATTGCTGGCATTTATCATTGGAAACATGGTAGGAAAGG 1612 consensus_9874#2 TTTTTCTGCACCTTTGCTTTTTGTTACCTAATATTGTTGTTGGGAGCAGACTTTGGAAAT 408 * ** * ** * * * ** * ** * **** * ** * * ** consensus_9874#0 AACTGGAGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCA 1856 consensus_9874#1 AACTGGAGTTTACTGGTTCCAGCAAGCTAATGATAAAGTTCGTCTTGACAGAATTGCTCA 1672 consensus_9874#2 TTGCCGCTTGTATGAGCTGGAGAATGTTAGT-ACAAATATCATGAAGGTAAGAT------ 461 * * ** * * ** * * ** * * *** ** * * * ** consensus_9874#0 ACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGG 1916 consensus_9874#1 ACAATTATTCGAACATATTGGCAAGTCGGTCACAGATGATAGTTTTAAGCAATGGGAGGG 1732 consensus_9874#2 --GTTCTTTCCAATGCAT--GTACACCTGTACTTTTCCAAGATTTCAA--AACGAAA--- 512 * *** ** ** * * * ** * *** ** ** * * consensus_9874#0 GCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAG 1976 consensus_9874#1 GCTGCTTGAGTTACTAGGTTCTGACATCGGTAGTGCAGGTGGTCTTGAGTTCCTTCACAG 1792 consensus_9874#2 ATTTCTTGGAGTTTTAA--CCTGGCTTAGTTATTATCTATATATTCAAACTT----ACCA 566 * **** * ** *** * * * ** * * * * * ** consensus_9874#0 GTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGT 2036 consensus_9874#1 GTACCGAGATTTCAAAAGGTCCCTTCAGATGGCACAAGAAGGAAGGACTGGCGAGTCTGT 1852 consensus_9874#2 GCATGCATATTTTATT-GTACCCACCTGTCGTTTTGACTCACGAGTCCTATCTATTTTTT 625 * * * **** * * *** * * * * ** ** * * * * * consensus_9874#0 TCGGCAAACCG-TGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTT 2095 consensus_9874#1 TCGGCAAACCG-TGGAGTTTCTTATACAGCTGATGAGAAATCCTTCTACACCTCAACGTT 1911 consensus_9874#2 CTTCTAGATTGCTGGCATTTATCATTGGAAACA--------------------------- 658 * * * *** *** * ** * consensus_9874#0 TCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGT 2155 consensus_9874#1 TCTGGCTACCACTTTTACATGACTCGGTGAGGCTTCTCAATTGCAAACCCTGCCCATTGT 1971 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAAC 2215 consensus_9874#1 TAAATGTTGCTGAAACGACTTTGTTGCTCAACAAGCTACAAGAACTGTCATTGGCCAAAC 2031 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TTCGGCCTGACTTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAG 2275 consensus_9874#1 TTCGGCCTGACCTTTCCAACATTCACCTACCAAGCCATGCATTGAACTCCGTCAGATTAG 2091 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTG 2335 consensus_9874#1 CTCTAGCATCAAACCTTGCGCGTGCAATTCTTGAAGAACCTTAAGTAATAGTTCTATTTG 2151 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTA 2395 consensus_9874#1 GGGTATGAGTGCCACATCCACTTTGCTGGAAGTTTGACGGCGTTAATCGTCAGTTGATTA 2211 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 CCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAG 2455 consensus_9874#1 CCAGTAACTGTATGTTCCTTGGGAAGAGGTTGAACTTGTGTTCACTCTGAATGAGCAAAG 2271 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 GTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACA 2515 consensus_9874#1 GTTGAACTTGTGTTCCTTCATGAATGAGCAATTGTGTCATGCATGTATATGTACCGGACA 2331 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 TTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAA 2575 consensus_9874#1 TTGTATTTTTAGCTTTAGTGATACCTTAGATGTTACTTATGTACAAAGAAATGCTAGTAA 2391 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 ATGTATTTTAGAATGGGCACAATATTGTATTCCT-------------------------- 2609 consensus_9874#1 ATGTATTTTAGAATGGGCACAATATTGTATTCCTTGTTTCTTCCTCTATTTCTTTTGGGG 2451 consensus_9874#2 ------------------------------------------------------------ consensus_9874#0 ------------ consensus_9874#1 TGAATAACTCTT 2463 consensus_9874#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||