These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTAGCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAGATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATATTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTCAGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGTTAGTCGTAACAGTAGTAGTTAAGTCACGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTTTCAAGTGTCAAAGTCACNTTGTCAGTCACTGTGTCGTCGTAGTTAGTCGTAACCAGTAGTATCCCGCAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACTAAAGTGAAACAANACAGTGTCAAAA] [+] EMBL BQ909106 [CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTAGCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAGATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATATTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTCAGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGTTAGTCGTAACAGTAGTAGTTAAGTCACGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTTTCAAGTGTCAAAGTCACNTTGTCAGTCACTGTGTCGTCGTAGTTAGTCGTAACCAGTAGTATCCCGCAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACTAAAGTGAAACAANACAGTGTCAAAA] consensusID : consensus_988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTGTAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGTCAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAACAGTAGTAGTCCCGCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAATAAAGTGAAACAAACAGTGTCAAAA] [+] EMBL BM038171 [GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTGTAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGTCAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAACAGTAGTAGTCCCGCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATGTCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAATAAAGTGAAACAAACAGTGTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_988#0 CCCCCTTACCAGACTAATAGTACCCAGATTAGTTTATAAGCCCAGGTCAGTGGGTAAGTA 60 consensus_988#1 ------------------------------------------------------------ consensus_988#0 GCGTGTACGTACCGCGTAGGTGTGTGTGTTTCTGTAAGTAGTTGTGGGCTGGTCCCGTAG 120 consensus_988#1 ------------------------------------------------------------ consensus_988#0 ATGTAGTTAGTCGTAGTAAGTTGTACGTGTGTTAGTGTCTGTAAGTACCTTAGAAGTATA 180 consensus_988#1 ------------------------------------------------------------ consensus_988#0 TTACATGCGTAAAGTCAGTCAGTNTCTTCAGAAGTTAGTTTTTTTAGTAGGTAGTTTGTC 240 consensus_988#1 ------------------------------------------------------------ consensus_988#0 AGTCCACAAGTTAGTGTTCAGTCAGTTGTCGTCCACGT-TAGTCGTAAC-AGTAGTAGTT 298 consensus_988#1 --------------------GTCAGGGGTCGTCCAAGTGTAGTCGTAACCAGTAGTAGTG 40 ***** ******** ** ********** ********* consensus_988#0 --AAGTCA-CGTTCTTTAGTTCGTCAAAGTCAGTNTTTCAGTAAGTANTTT-TCAAGTGT 354 consensus_988#1 TAAAGTCAGTGTCGTGTAGNTCGTCAAAGTCAGTGTGTCAGATAATAGTGTGTCAAGTGT 100 ****** ** * *** ************** * **** * ** * * ******** consensus_988#0 CAAAGTCACNTTGTCAGTCAC-TGTGTCGTCGTAGT-TAGTCGTAACCAGTAGTA-TCCC 411 consensus_988#1 CAGAAGTCAGTTGTCAGTCAGGTGTGTCGTCGTAGTGTAGTCGTAAC-AGTAGTAGTCCC 159 ** * ********** ************** ********** ******* **** consensus_988#0 GCA-GCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATG 470 consensus_988#1 GCAAGCAAAGCGCGGAGCATTTAGAGAATGAGCAAGACCAAATGCTCCTGAAGAAATATG 219 *** ******************************************************** consensus_988#0 TCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATANGNACT 530 consensus_988#1 TCAACTATCAGTTTTGTCGCATATTTTAGTCAAATTTTCATCGCATATTTTATAGGAA-T 278 ****************************************************** * * * consensus_988#0 AAAGTGAAACAANACAGTGTCAAAA 555 consensus_988#1 AAAGTGAAACAAA-CAGTGTCAAAA 302 ************ *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||